Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000785585.1_202014-11- 19] 464 sequences; 41,583,904 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1 158 9e-34 seq112 123 2e-23 seq17 96.9 2e-15 >seq1 Length=1383374 Score = 158 bits (174), Expect = 9e-34 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | |||||||| ||||| ||| | |||||||||||| ||||||||||| ||| | Sbjct 702042 CCGCCACGCAGTCTCAGCACCAAGTGCAACGTGCTCTCCTTCTGGATGTTGTAGTCGCTG 701983 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| |||| |||| |||||| || || || |||| |||||||| || | ||| Sbjct 701982 AGAGTCCGCCCGTCCTCCAACTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGAGGA 701923 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | || ||||| ||| |||||| ||| | | | || ||||| | | |||||| Sbjct 701922 ATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATCGTGTCTGAGCTCTCCACC 701863 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| |||||||||||| || || || ||||| |||||||||||||| Sbjct 701862 TCCAGCGTAATCGTCTTGCCAGTAAGTGTCTTTACGAAGATTTGCAT 701816 Score = 138 bits (152), Expect = 8e-28 Identities = 157/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| || || ||||| ||||| ||||||||||| || | ||| ||| |||| || Sbjct 701797 CACGAGATGGAGCGTCGATTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTC 701738 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| || |||||||||| |||||||| || | || | |||||||| ||| Sbjct 701737 CAGCTGCTTGCCTGCAAAGATCAGGCGCTGCTGGTCGGGCGGGATCCCTTCCTTGTCCTG 701678 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | | | || |||||| ||||| ||||||| ||| |||||||| Sbjct 701677 GATCTTGCTCTTGACGTTGTCGATCGTGTCGCTCGATTCAACCTCCAGCGTGATCGTCTT 701618 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || || ||||| ||||||||||||||| Sbjct 701617 GCCAGTAAGTGTCTTTACGAAGATTTGCATG 701587 Score = 125 bits (138), Expect = 5e-24 Identities = 156/212 (74%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| || || |||||| ||||||||||| |||| || ||| |||| || Sbjct 701568 ACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCTTCG 701509 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| ||||| ||||||| |||||||| || | || | || ||||| ||| Sbjct 701508 AGTTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGG 701449 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| || || ||| | || |||||| ||| || ||||| | ||| || |||| Sbjct 701448 ATCTTGGATTTGACATTGT--CGATCGTGTCGCTGGACTCGACCTCAAGCGTGATGGTCT 701391 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || || || ||||||||||||||||||||| Sbjct 701390 TGCCAGTAAGTGTCTTCACGAAGATTTGCATG 701359 >seq112 Length=144762 Score = 123 bits (136), Expect = 2e-23 Identities = 156/212 (74%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| || || ||||| ||||| ||||||||||| || | ||| ||| |||| || Sbjct 45890 CACGAGATGGAGCGTCGATTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTC 45949 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| || |||||||||| |||||||| || || | | |||||||| ||| Sbjct 45950 CAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGATGTGATCCCTTCCTTGTCCTA 46009 Query 44248 TATCTTCTGCTTCAATGTTCCT-ATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| ||||| | || |||||| || || ||||||| ||| ||||||| Sbjct 46010 AATCTTGCTCTT-GATGTTGTTGATTGTGTCGCTCGACTCAACCTCCAGCGTGATCGTCT 46068 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | | || || ||||||| ||| || |||||| Sbjct 46069 TGACAGTAAGTGTCTTCATGAAAATCTGCATG 46100 >seq17 Length=408214 Score = 96.9 bits (106), Expect = 2e-15 Identities = 134/184 (73%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 44148 CCTTTTGGATGTTGTAATCGGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 |||| ||||||||||| ||| ||||| | || | || || || ||||| ||||| || Sbjct 190086 CCTTCTGGATGTTGTAGTCGCTCAGAGTTCG-GC-CATCTTCAAGTTGCTTGCCGGCGAA 190029 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 |||||| |||||||| || | || | |||||||| || ||||| ||| | | Sbjct 190028 GATCAATCGCTGCTGGTCGGGCGGGATGCCTTCCTTGTCTTGGATCTTGGACTTGACGTT 189969 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | || ||||||| || || ||||| | || || ||||| |||||||||||||| || Sbjct 189968 GTCGATCGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGAC 189909 Query 44326 GAAG 44329 |||| Sbjct 189908 GAAG 189905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359988364254288