Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000785585.1_202014-11- 19] 464 sequences; 41,583,904 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1 174 1e-38 seq112 141 9e-29 seq51 129 5e-25 seq17 87.8 2e-12 >seq1 Length=1383374 Score = 174 bits (192), Expect = 1e-38 Identities = 178/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || ||||| | ||||| ||||| || ||||||||| ||||| |||||||| Sbjct 701587 GCCGCCACGGAGACGGAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 701528 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| |||| ||||| |||||||||||||| ||||||||||| ||||||| ||| Sbjct 701527 CAGGGTGCGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGG 701468 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||||| || | || | || || | | | |||||||| ||||| | Sbjct 701467 GATGCCCTCCTTGTCC-TGGATCTTGGATTTGACATTGTCGATCGTGTCGCTGGACTCGA 701409 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | ||| || || || || || || ||||| ||||| || |||||| Sbjct 701408 CCTCAAGCGTGATGGTCTTGCCAGTAAGTGTCTTCACGAAGATTTGCATG 701359 Score = 167 bits (184), Expect = 2e-36 Identities = 178/230 (77%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 |||||||| || || | ||| ||||| ||||| |||||||| ||||| ||||| ||| Sbjct 701814 CCGCCGCGGAGCCGGAGCACGAGATGGAGCGTCGATTCCTTCTGGATGTTGTAGTCCGAG 701755 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGG 41754 || ||||| |||| || ||||||||||| || || ||||||||||| ||||| ||||| Sbjct 701754 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCTGCAAAGATCAGGCGCTGCTGGTCGGGCGGG 701695 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | || ||||||||| ||| || ||| ||| | | | ||||||||||| || | Sbjct 701694 ATCCCT-TCCTTGTCCTGGATCTTGCTCTT-GACGTTGTCGATCGTGTCGCTCGATTCAA 701637 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||| ||| ||||| || || || || ||||||||||| || |||||| Sbjct 701636 CCTCCAGCGTGATCGTCTTGCCAGTAAGTGTCTTTACGAAGATTTGCATG 701587 Score = 156 bits (172), Expect = 4e-33 Identities = 176/232 (76%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || || | | ||||| |||| ||||||||||||||| ||||| |||||| Sbjct 702043 GCCGCCACGCAGTCTCAGCACCAAGTGCAACGTGCTCTCCTTCTGGATGTTGTAGTCGCT 701984 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| || ||| |||| || | ||||||||| ||||| ||||| ||||| ||||||| || Sbjct 701983 GAGAGTCCGCCCGTCCTCCAACTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGAGG 701924 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACT 41810 || || |||||||||| ||| || ||| ||| | | | ||||| ||| || Sbjct 701923 AATGCCCTCCTTGTCCTGGATCTTCGACTT-GACGTTGTCGATCGTGTCTGAGCT---CT 701868 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||||| ||| ||||| || || || || ||||||||||| || ||||| Sbjct 701867 CCACCTCCAGCGTAATCGTCTTGCCAGTAAGTGTCTTTACGAAGATTTGCAT 701816 >seq112 Length=144762 Score = 141 bits (156), Expect = 9e-29 Identities = 171/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||||||||| || || ||| ||||| ||||| |||||||| ||||| ||||| || Sbjct 45872 GCCGCCGCGGAGGCGGGGCACGAGATGGAGCGTCGATTCCTTCTGGATGTTGTAGTCCGA 45931 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCG-CGG 41753 ||| ||||| |||| || ||||||||||| || || ||||||||||| ||||| | | Sbjct 45932 GAGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGATGT 45991 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCA 41813 || | || ||||||||| || || ||| | | |||||||||||||| | Sbjct 45992 GATCCCT-TCCTTGTCCTAAATCTTGCTCTTGATGTTGTTGATTGTGTCGCTCGACTCAA 46050 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||| ||| ||||| || | || || ||||| | ||||||||||||| Sbjct 46051 CCTCCAGCGTGATCGTCTTGACAGTAAGTGTCTTCATGAAAATCTGCATG 46100 Score = 102 bits (112), Expect = 8e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || || | | ||| | ||||| || |||||||| ||||| |||||||| Sbjct 46100 GCCGCCACGCAGGTGGATGACCGGGTGCAGGGTCGAGTCCTTCTGGATGTTGTAGTCGGA 46159 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||| | || ||||| |||||||||||||| ||||||||||| || || | || Sbjct 46160 CCTGGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAAGATCAGGCGCTGCTGTTCGGGCGG 46219 Query 41755 AACGCTCTCCTTGTCCATGATTTT 41778 || || |||||||||| ||| || Sbjct 46220 AATGCCCTCCTTGTCCTGGATCTT 46243 >seq51 Length=241757 Score = 129 bits (142), Expect = 5e-25 Identities = 109/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| || ||||| || || || |||||||| ||||| ||||||||| Sbjct 20505 CCACCGCGAAGACGCAAGACCAGGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCGGAG 20446 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| ||||| |||||||||||||| |||||||| || ||||||| |||| Sbjct 20445 AGAGTGCGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGGTCCGGGGGA 20386 Query 41756 ACGCTCTCCTTGTC 41769 | || |||||||| Sbjct 20385 ATGCCTTCCTTGTC 20372 >seq17 Length=408214 Score = 87.8 bits (96), Expect = 2e-12 Identities = 130/182 (71%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| |||||| || || || | || || || |||||||||||||| | Sbjct 190086 CCTTCTGGATGTTGTAGTCGCTCAGAGTTCGGCCATCTTCAAGTTGCTTGCCGGCGAAGA 190027 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 ||| ||||| ||||| | || | || |||||||| ||| || ||| ||| | Sbjct 190026 TCAATCGCTGCTGGTCGGGCGGGATGCCTTCCTTGTCTTGGATCTTGGACTT-GACGTTG 189968 Query 41793 AC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 | | |||||| |||||| ||||| | || || || || ||||| || ||||| ||| Sbjct 189967 TCGATCGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACG 189908 Query 41852 AA 41853 || Sbjct 189907 AA 189906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462301318636800