Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000835495.1_202015-02- 23] 277 sequences; 43,029,152 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2 230 3e-55 seq1 114 2e-20 >seq2 Length=7068955 Score = 230 bits (254), Expect = 3e-55 Identities = 748/1144 (65%), Gaps = 22/1144 (2%) Strand=Plus/Plus Query 53711 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 53770 || |||||||| || || || ||||||| | | ||| |||| | |||||||||||| Sbjct 2067207 GAGGCCAGATTGCACACAGCGACCTCATCGGGAGCCGTGTATTCGACAATCTCAGTGCAA 2067266 Query 53771 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 53830 ||||| | |||||| || || || | || || |||||| | || || || ||| Sbjct 2067267 AGATTGGAGCTTCGGATGGTCCCCAAGTTCTTCTGGTTGCTCTTTCTATTGCAGGCGTCC 2067326 Query 53831 TTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACG 53890 || || || || | ||||| |||||||| |||| | || | || || | ||| | Sbjct 2067327 TTGTAGAGCATATAGGGCGTCCCAGTTTCGGTCTGTGCCTCGAGGATAGCATACCATAGT 2067386 Query 53891 ACACGAGCCTTTATTATAGATTTGT-ATCTCTTTTCTCTTTCGTATAGT----GTATACA 53945 ||||||||| || | | | | | ||| ||| ||| ||||| | Sbjct 2067387 TTCTGAGCCTTTAC---AGTCTGGCGACCACGGCCCTCCTTCTCATATCTCTCGTATAGA 2067443 Query 53946 ATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCA 54005 |||| || |||||| || | || | | | | ||||| |||| ||||| | | Sbjct 2067444 G-CGTTGAA-CTCGTCACCATAGACGTCGGCAAGGCCAGGTGCCTCATGAGGACAGAAGA 2067501 Query 54006 ACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-T 54064 | ||| ||| || | || || |||| ||| || | |||||| |||| | || | Sbjct 2067502 GAGTCCATTCTTGGTTCTTCTCGACACGTTCCATGAACAAGTCAGGAGTCCACATGGCGT 2067561 Query 54065 ATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 54124 | || || || | | |||| || || || || |||||| | || | | || Sbjct 2067562 AGAACAAG-TCGCGTGCTCTAACCTCTTCCTTGCCGTGGTTCTTTCTCAGGTTCAAAAAG 2067620 Query 54125 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTT 54184 | | | || | ||||| || || | ||| |||| | | | || || || || || Sbjct 2067621 TCGAACACGTCTGCGTGCCATGGCTCGAGGTAGATGGCAAAAGCACCTGGGCGCTTATTG 2067680 Query 54185 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 54244 || |||||||| | ||| | ||| || ||||| | || | | ||| || |||| || Sbjct 2067681 CCACCCTGATCGACGTAGCGAGCAGTATTATTGAAGACGCGAAGCATGGGGATAAGCCCG 2067740 Query 54245 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTG 54302 ||||| | |||||||| || | || ||| ||| |||||||||| | | |||| Sbjct 2067741 TTGGAGGTGCCATTGGTGCCTGCAATGTAGGATCCTGTGGCACGAATGCAATGGGCATTG 2067800 Query 54303 ATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGA 54362 | |||| || || || || | || ||||| | || || || | || ||||| | Sbjct 2067801 A--GACCAATACCTCCAGCTGTCTTGGAGATCATGGCACAAGTCTTGAGGGTGTCATATA 2067858 Query 54363 TGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 54422 | ||||| || || || || |||||| || | |||||| |||| ||| | || Sbjct 2067859 TTCCCTCGATGCTGTCTTCTTTCATGTCAATCAAGAAACAGGAGGACAGTTGAGGTTGAG 2067918 Query 54423 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGAT 54482 ||||| || || || | ||| || |||||||| ||||| || || | || | |||| Sbjct 2067919 GGGTTCCGGCGTTGAAAAGGGTGGGCGAAGCGTGGGTAAAGCACTTCTGGGACATGAGAT 2067978 Query 54483 TGTACGTCTCGATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATT 54541 ||||||||||||| || || ||||| | || ||||| || ||||| |||||||| Sbjct 2067979 TGTACGTCTCGATGGCCTTTTCAATATCGTCGCTG-TGAATACCCACTGCCACACGCATA 2068037 Query 54542 AACATGTGCTGAGGTCTTTCAACGATCTTG-TTGTTTATTTTCAGCAAGTAGGATTTTTC 54600 | |||||| || || | |||| | | |||| ||| || || |||| ||| ||| | || Sbjct 2068038 AGCATGTGTTGGGGCCGTTCAGC-AACTTGATTGCCAATCTTGAGCAGGTATGATCTCTC 2068096 Query 54601 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTT 54660 || || || ||||||||||| | ||| |||||||| ||||| | ||| | ||||| Sbjct 2068097 CAGCGTCTTGAAACCAAAATATTGGTAGTTGAAGTCTCGGTCGTAGACAATTGCAGAGTT 2068156 Query 54661 GAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACTT-GAAATAATCGGAGAAT 54719 || | ||| | | | | || |||| | | | | ||| || || ||||| || Sbjct 2068157 GAACTCATCAGCGTGTCTCATGAC-ACATTCGTAGGTCTCCTTGGAGATCATCGGGGAGG 2068215 Query 54720 GTTTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTCATCACTTCACTAAATAGtt 54779 ||||| |||||| ||||||||||||| | | ||| | ||| |||| | | Sbjct 2068216 GTTTCTGATTTTTCGGATTGACATAGTGGTAGAGGTCCGAGACCACGGAGGAAAATTGCT 2068275 Query 54780 tttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCG 54839 | || || | |||||| || ||||| || || || | || || || | ||||| || | Sbjct 2068276 TCTTGGTCTGTTTGTGGAGGTTTGAAACAGCGATACGTGCTGCGAGGACTGCATAGTCGG 2068335 Query 54840 GATG 54843 |||| Sbjct 2068336 GATG 2068339 >seq1 Length=8230860 Score = 114 bits (126), Expect = 2e-20 Identities = 206/299 (69%), Gaps = 3/299 (1%) Strand=Plus/Plus Query 24156 CCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTT 24215 |||||||| | | || | |||||||| || ||||| |||||||| || || | Sbjct 2004491 CCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATCAGTCCTTTGCTC 2004550 Query 24216 TTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAG 24275 || ||||| || ||||| ||||| |||||||| ||||| || ||||| || || || || Sbjct 2004551 TTCAGCCAGAAGATGGATGCAAAGGATCCAGAGAAGAAGATGCCTTCGACGGCTGCGAAA 2004610 Query 24276 GCAATAAGTCTTTCTCCATAAC-CGGCGCT--GTCATGTATCCACTTTTGAGCCCAATCG 24332 || | |||| || || | | || | || ||| |||||| ||||||| || Sbjct 2004611 GCCACTAGTCGTTGGGCAAAGCTCGACTCTTTGTCTGATATCCATCGCAGAGCCCAGTCT 2004670 Query 24333 GCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTA 24392 || ||||| | ||||| ||||| || || || | || ||||| | || || || Sbjct 2004671 GCTTTCTTGCGAATGCAAGGGATTGTGTCGATGGCGTCGAACAGATATGTCTTCTCTTTG 2004730 Query 24393 CTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAAT 24451 || || ||||| || ||||| | ||| || ||||||||||| || || || || || Sbjct 2004731 GGGTCCTTTACATAGGTGTCAATGAGAAGGCTGTACATTTCCGAGTGGATATTCTCCAT 2004789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593719544238960