Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000835495.1_202015-02- 23] 277 sequences; 43,029,152 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq7 107 2e-18 >seq7 Length=4110827 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| |||| || |||||||| || ||||| ||||| | | Sbjct 1063353 CCGCCACGGAGACGGAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 1063412 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || |||| || || || ||||| || | || || | |||||||||| ||| Sbjct 1063413 AGGGTGCGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGG 1063472 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| ||| || | | ||| || || | || ||| Sbjct 1063473 ATGCCCTCCTTGTCCTGGATCTTGGATTTGACATTGTCGATCGTGTCGCTGGACTCGACC 1063532 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || ||||||||||| || | || || || || |||||||| Sbjct 1063533 TCAAGCGTGATGGTCTTGCCAGTAAGTGTCTTCACGAAGATTTGCAT 1063579 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || |||| |||||| | ||| | || || ||||| || ||||| ||||||| Sbjct 1063125 CCGCCGCGGAGCCGGAGCACGAGATGGAGCGTCGATTCCTTCTGGATGTTGTAGTCCGAG 1063184 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || ||||||||||||| ||||||||| | || || | ||||||||| || Sbjct 1063185 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGCGGG 1063244 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| || || | | ||| || || | | || Sbjct 1063245 ATCCCTTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATCGTGTCGCTCGATTCAACC 1063304 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || || |||||||| || | || || || || |||||||| Sbjct 1063305 TCCAGCGTGATCGTCTTGCCAGTAAGTGTCTTTACGAAGATTTGCAT 1063351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422257774479332