Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000835495.1_202015-02- 23] 277 sequences; 43,029,152 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq7 143 3e-29 seq1 140 3e-28 seq6 114 1e-20 seq4 107 2e-18 seq5 100 3e-16 >seq7 Length=4110827 Score = 143 bits (158), Expect = 3e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || ||||| |||||||| | || ||||| ||| | Sbjct 1063579 ATGCAAATCTTCGTGAAGACACTTACTGGCAAGACCATCACGCTTGAGGTCGAGTCCAGC 1063520 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | |||| || || | ||||| |||||||||||| |||||||| Sbjct 1063519 GACACGATCGACAATGTCAAATCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 1063460 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| || || || |||| |||||||| |||||||||| Sbjct 1063459 CAGCGCCTGATCTTCGCCGGCAAGCAACTCGAAGACGGCCGCACCCTGTCCGACTACAAC 1063400 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | || ||||| || || Sbjct 1063399 ATCCAGAAGGAGTCGACCCTGCACCTGGT 1063371 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| |||||||| || || || ||||| || || || | || || || | | Sbjct 1063123 ATGCAAATCTTCGTAAAGACACTTACTGGCAAGACGATTACGCTGGAGGTGGAGAGCTCA 1063064 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| ||||| || || | ||||| |||||||| || ||||||| Sbjct 1063063 GACACGATCGACAACG-TCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCA 1063005 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || || | ||||||||| ||| |||| |||| ||| || |||| ||||||||| Sbjct 1063004 GCAGCGGCTGATTTTCGCGGGCAAGCAGTTGGAGGACGGGCGGACTCTCAGCGACTACAA 1062945 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||| |||| | ||| || | || | |||||| Sbjct 1062944 CATCCAGAAGGAGAGCACGTTGCACTTGGTGCTGAGACTGCGTGGCGGC 1062896 Score = 134 bits (148), Expect = 1e-26 Identities = 158/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| |||||||| || || || ||||| || ||||| | || || ||| | | | Sbjct 1063351 ATGCAAATCTTCGTAAAGACACTTACTGGCAAGACGATCACGCTGGAGGTTGAATCGAGC 1063292 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| ||||| || || | ||||| || || ||||| | ||||| Sbjct 1063291 GACACGATCGACAACG-TCAAGAGCAAGATCCAGGACAAGGAAGGGATCCCGCCCGACCA 1063233 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| |||||||| |||||||| |||| ||||| ||| |||||||| Sbjct 1063232 GCAGCGCCTGATCTTTGCGGGCAAGCAGCTGGAGGACGGCCGCACGCTCTCGGACTACAA 1063173 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||||||||| | ||||| ||||| ||| Sbjct 1063172 CATCCAGAAGGAATCGACGCTCCATCTCGTG 1063142 >seq1 Length=8230860 Score = 140 bits (154), Expect = 3e-28 Identities = 342/511 (67%), Gaps = 12/511 (2%) Strand=Plus/Minus Query 116870 ATGGAGAACGTGCACTCGGAAATGTATTCGACC--CTCATCGACACGTACGTGCGCTCTT 116927 |||||||| | |||||||||||||| | || ||||| ||||| || || Sbjct 2004789 ATGGAGAATATCCACTCGGAAATGTA--CAGCCTTCTCATTGACACCTATGTAAAGGACC 2004732 Query 116928 CGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGG 116987 | | |||||| | |||| |||||||||| || || || ||| | |||| | Sbjct 2004731 CCAAAGAGAAGACATATCTGTTCGACGCCATCGACACAATCCCTTGCATTCGCAAGAAAG 2004672 Query 116988 CCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGG 117047 | || ||||| ||||| ||||| | | || |||| | ||| | | | || || |||| Sbjct 2004671 CAGACTGGGCTCTGCGATGGATATCAGACAAAGAGTCGAGCTTTGCCCAACGACTAGTGG 2004612 Query 117048 CCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCA 117107 | ||||| |||||||| ||| ||||||| || || || || |||| || ||||| | Sbjct 2004611 CTTTCGCAGCCGTCGAAGGCATCTTCTTCTCTGGATCCTTTGCATCCATCTTCTGGCTGA 2004552 Query 117108 AGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 ||| || || ||||||||||| || ||| ||||||||||||||| | ||||||| Sbjct 2004551 AGAGCAAAGGACTGATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCTCGTGACGAGG 2004492 Query 117168 GTCTGCATTGCGACTTTGCCTG---TTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCG 117224 | |||| |||||||| || |||| || ||| ||| || ||| ||| | Sbjct 2004491 GCATGCACACGGACTTTGCGTGCCTTTTGATG--CAA-CATCTGCAGCACAAGCCGGACC 2004435 Query 117225 CGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCG 117284 | | | || | || | ||||| || ||| ||||| || |||||||||| Sbjct 2004434 CACAACTCATCGAAAACATTATAACCGAAGCCGTCAGGATCGAAAAGGAATTCCTCACCG 2004375 Query 117285 AAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAG 117343 | || || || || ||||| || | || | |||| | |||| || ||||| ||| Sbjct 2004374 ATGCCCTCCCCGTCGCACTGCTCGGCATGAACT-CGAAGCTCATGTGTCAGTACATTGAG 2004316 Query 117344 TTCGTCGCCGACAGGCTGCTGCTCGAGCTGG 117374 || || || ||| | ||||| || | |||| Sbjct 2004315 TTTGTTGCTGACCGTCTGCTCCTTGCCCTGG 2004285 Score = 82.4 bits (90), Expect = 8e-11 Identities = 133/191 (70%), Gaps = 3/191 (2%) Strand=Plus/Minus Query 116669 TTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAG---CGCTTG 116725 |||||||| | || || || || || ||||| ||| ||||||| | || ||| Sbjct 2005043 TTCTGGACGGCAGAAGAAGTTGATCTCTCCAAAGACCTTCACGACTGGCACAACCGTTTG 2004984 Query 116726 AACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGC 116785 ||| | |||| || | |||||| ||||| || ||||| || || || |||||| Sbjct 2004983 AACAATGACGAACGTTACTTCATCTCTCACGTCCTCGCCTTCTTTGCTGCATCGGACGGC 2004924 Query 116786 ATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGG 116845 || ||||||||||| || | ||||| ||| | || || || ||| | || || || Sbjct 2004923 ATTGTCAACGAGAACCTTCTAGAGCGCTTCAGTGCCGAAGTACAAGTGCCGGAAGCCCGT 2004864 Query 116846 TGCTTCTACGG 116856 ||||||||||| Sbjct 2004863 TGCTTCTACGG 2004853 >seq6 Length=4175021 Score = 114 bits (126), Expect = 1e-20 Identities = 136/182 (75%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACA-GCGT 40757 ||||| || || ||||||||||| ||||||||| | || ||||| | |||||| | Sbjct 1382970 TTCGTCAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGTCGTCCGACACGATC 1383029 Query 40758 GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817 | |||| ||||| || || | ||||| || |||||||| | |||||||| ||| | Sbjct 1383030 GACAACG-TCAAGTCCAAGATCCAAGACAAGGAAGGCATCCCGCCCGACCAGCAGCGATT 1383088 Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877 |||| ||| ||||| || || || || | || || || | |||||||||||||||||| Sbjct 1383089 GATCTTCGCCGGCAAGCAACTTGAAGATGGCCGAACTCTGAGCGACTACAACATCCAGAA 1383148 Query 40878 GG 40879 || Sbjct 1383149 GG 1383150 >seq4 Length=6030834 Score = 107 bits (118), Expect = 2e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| || ||||| ||| ||||||||||||| || |||| ||| ||||| || || || Sbjct 3720578 GACAAGGAAGGCATTCCCCCGGACCAGCAACGCCTGATCTTCGCCGGCAAGCAACTCGAA 3720637 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 |||| ||||| ||| ||||||||||||||||||||| | || || || || || ||| Sbjct 3720638 GACGGCCGCACTCTCTCCGACTACAACATCCAGAAGGAATCGACCCTCCACCTGGTCTTG 3720697 Query 40903 CG 40904 || Sbjct 3720698 CG 3720699 >seq5 Length=4609732 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||| | || || || || | ||| || ||||| | || || || | | | Sbjct 1365202 ATGCAGATTTTCATGAAGACACTTACTGTCAAGACGATCACGCTGGAGGTTGAGTCGAGC 1365143 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | ||||| || ||| ||||| || || ||| | | |||||| Sbjct 1365142 GACACAATCAACAACATCAAGAGCAAGATTTAGGACAAGGAAGGGATCACATCCGACCAG 1365083 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| |||||||| |||||||| |||| |||||| |||||||||| Sbjct 1365082 CAGCGCCTGATCTTTGCGGGCAAGCAGCTGGAGGACGGCCGCACCAGGTCCGACTACAAC 1365023 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||| | ||||| ||||| ||| ||| | | |||||| Sbjct 1365022 ATCCAGAAGGAATCGACGCTCCATCTCGTGCCCCGCCTCCGCGGCGGC 1364975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515217416053520