Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000835495.1_202015-02-
23] 277 sequences; 43,029,152 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq7 134 9e-27
seq5 104 2e-17
seq6 91.5 1e-13
>seq7
Length=4110827
Score = 134 bits (148), Expect = 9e-27
Identities = 168/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|||||||| |||| ||||| || || | || ||| ||||| ||||||||||| ||
Sbjct 1063125 CCGCCGCGGAGCCGGAGCACGAGATGGAGCGTCGATTCCTTCTGGATGTTGTAGTCCGAG 1063184
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281
||| ||| |||| |||| ||||||||| || || || || ||||||||||| | ||||
Sbjct 1063185 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGCGGG 1063244
Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341
| || |||||||| ||||| ||| | | | | |||| ||| ||||||| ||
Sbjct 1063245 ATCCCT-TCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATCGTGTCGCTCGATTCAAC 1063303
Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||| |||||| || ||||| || || || || || ||||| |||||
Sbjct 1063304 CTCCAGCGTGATCGTCTTGCCAGTAAGTGTCTTTACGAAGATTTGCAT 1063351
Score = 131 bits (144), Expect = 1e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
||||| ||||| |||||||||| ||| || || || || ||||| ||||||||||||
Sbjct 1062897 CCGCCACGCAGTCTCAGCACCAAGTGCAACGTGCTCTCCTTCTGGATGTTGTAGTCGCTG 1062956
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| || |||| |||||||||||||| |||||||| |||||||||||||| ||
Sbjct 1062957 AGAGTCCGCCCGTCCTCCAACTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGAGGA 1063016
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| || ||||||||| ||||| ||| | | | | |||| || | || ||
Sbjct 1063017 ATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATCGTGTCTGAGCTCTCCACC 1063076
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||| ||| || || ||||| || || || || || ||||| |||||
Sbjct 1063077 TCCAGCGTAATCGTCTTGCCAGTAAGTGTCTTTACGAAGATTTGCAT 1063123
Score = 131 bits (144), Expect = 1e-25
Identities = 167/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
||||| || || | || |||||||| | || || ||||| |||||||||||||||
Sbjct 1063353 CCGCCACGGAGACGGAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 1063412
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| ||| |||| || | |||||||| ||||| || || ||||||||||| |||
Sbjct 1063413 AGGGTGCGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGG 1063472
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| || ||||||||| ||||| || | || | | |||| ||| | || |||||
Sbjct 1063473 ATGCCCTCCTTGTCCTGGATCTTGGATTTGACATTGTCGATCGTGTCGCTGGACTCGACC 1063532
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGC 34392
|| | ||||||||| ||||| || || || ||||| ||||| ||||| ||
Sbjct 1063533 TCAAGCGTGATGGTCTTGCCAGTAAGTGTCTTCACGAAGATTTGCATGGC 1063582
>seq5
Length=4609732
Score = 104 bits (114), Expect = 2e-17
Identities = 166/231 (72%), Gaps = 8/231 (3%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA- 34221
|||||||| || | |||| || || | || ||| ||||| ||||||||||||||
Sbjct 1364976 CCGCCGCGGAGGCGGGGCACGAGATGGAGCGTCGATTCCTTCTGGATGTTGTAGTCGGAC 1365035
Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGG 34280
| | || ||| |||| |||| ||||||||| || || || || ||||||||||| || |
Sbjct 1365036 CTGGTG-CGGCCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGATGT 1365094
Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGA--TCGGCTATCGAATCGGTCGATTC 34338
| | || |||||||| ||| | ||||| | || | | || | ||| |||| ||
Sbjct 1365095 GATCCCT-TCCTTGTC--CTAAATCTTGCTCTTGATGTTGTTGATTGTGTCGCTCGACTC 1365151
Query 34339 GACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| |||| |||||| || ||| | || || || |||| || ||||||||
Sbjct 1365152 AACCTCCAGCGTGATCGTCTTGACAGTAAGTGTCTTCATGAAAATCTGCAT 1365202
>seq6
Length=4175021
Score = 91.5 bits (100), Expect = 1e-13
Identities = 128/180 (71%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261
||||| |||||||||||| ||| ||| | || || | |||||||| ||||| ||
Sbjct 1383148 TTCTGGATGTTGTAGTCGCTCAGAGTTCGGCCATCTTCAAGTTGCTTGCCGGCGAAGATC 1383089
Query 34262 AGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT 34321
| |||||||||||| || | || |||||||| ||||| ||| | | | |
Sbjct 1383088 AATCGCTGCTGGTCGGGCGGGATGCCTTCCTTGTCTTGGATCTTGGACTTGACGTTGTCG 1383029
Query 34322 ATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAG 34381
|||| |||| ||| ||||| || | |||||||| ||||| ||||| || || || |||
Sbjct 1383028 ATCGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAG 1382969
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 323070909329120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |