Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000835495.1_202015-02- 23] 277 sequences; 43,029,152 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2 428 4e-115 seq1 178 1e-39 seq7 123 2e-23 seq6 93.3 4e-14 seq5 86.0 6e-12 >seq2 Length=7068955 Score = 428 bits (474), Expect = 4e-115 Identities = 1238/1890 (66%), Gaps = 27/1890 (1%) Strand=Plus/Plus Query 22104 TCTTG-TCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATG 22162 ||||| || || || || || || | | || ||||| | ||||| || || |||||| Sbjct 2066283 TCTTGGTCGACAGTGAATTGAATAGGTTGTGTGGCCGCCATCGTGCGCAGGTAGTACATG 2066342 Query 22163 CCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTC 22222 || ||||| |||||||| ||||| | ||| || || ||| | || || | Sbjct 2066343 CCGGTCTTGAGACCCATTTTCCAGCCTGCAAAGTGCATGCTCGTGATCTTGCCCATGGTT 2066402 Query 22223 GGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCG 22282 || | || || | |||| ||||| ||| || || || || || || || || Sbjct 2066403 GGTTCCTTCAAGTGAATGTTGAGAGACTGGGACTGGTCAATGAAGGCACCACGGTCCGCT 2066462 Query 22283 GCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATC 22342 ||||| | | | || ||| |||||||||||||||||||| || |||| Sbjct 2066463 GCCATTTGCAGGACGGTCCGCTGGCTGATTTCCCATACGGTCTTGTATAGAGCTTTGATG 2066522 Query 22343 TCTAACGGTATCGATTCG-ATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTT 22401 || || | || | | || | |||| || ||| | | |||||| ||| || Sbjct 2066523 TCCGCAGGAA-CGTTGGGGATGTTTTGGATCGAGCCGCCTTCGGCGATGATCCGATTCTT 2066581 Query 22402 AATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCAC 22461 || | ||| ||| | || | | || | ||| || | ||| | || || || Sbjct 2066582 CATATTGTCGGACCATAGGCCCAAGTCGACGAGATCCTTCAGCAGCCAGGGATTGACAAC 2066641 Query 22462 TTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGA 22521 || ||||| |||| | ||| ||||| ||| || || |||||| |||||||||| | Sbjct 2066642 CTGGAACTCACCGGCAAGGACACGGCGAGAGTAGATATTAGATGTGTACGGTTCGAAGCA 2066701 Query 22522 TTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGA 22581 ||| ||||| || || || |||| ||||| || || ||||| || || | || || || Sbjct 2066702 TTCGTTGTTGCCGAGGATTTGAGAAGTCGAGGCAGTGGGCATGGGAGCAACAAGGAGAGA 2066761 Query 22582 GTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGA--GCATCGACCAGTCCCACAGATCG 22639 ||| | | || || || | ||| | || | || || ||| ||||||| || Sbjct 2066762 GTTGCGAATACCATGTTTGGCAATCTCGGCTTTCAAGGCGTC--CCAATCCCACAAGTCT 2066819 Query 22640 GACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCC--GCGACTCGCCGGGCTGC 22697 || || || ||||| |||||| |||||||| | | ||| ||||| | ||||||| Sbjct 2066820 GAGGGAGTGACATT---CCACATGTCGTATTGAAGAATGCCTTGCGACACT--GGGCTGC 2066874 Query 22698 CTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGC 22757 ||||||| ||||| || | || | | || ||||| || || | || Sbjct 2066875 CTTCGTATGTTTCATATGTTCCCTGCTCCTTTGCCAGTTCACAAGAAGCAGTGAGAGCAG 2066934 Query 22758 CGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACG 22817 | | || || ||||||||||||| | ||||||| ||| || ||| | | Sbjct 2066935 CATGGTAGATGGTCTCGAAGATTTGGATATTCAATTGCCTGGCCTCGGGAGAGTCGAAAG 2066994 Query 22818 GCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGT 22877 | | ||||| | | ||| ||||| || | ||| ||||| || | ||||| ||||||| Sbjct 2066995 GAAGACGCAGCGCAAGGAAGGCGTCGGCGAGACCTTGAACTCCGAGACCGACGGGTCGGT 2067054 Query 22878 TTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGT 22937 | | || | || || || || | ||| || | || |||||| | ||| Sbjct 2067055 GTCGGAAGTTGCTCTTCTTCGCTTCAGGGACAGGGTAGTAGTTGATATCGATAATCTTGT 2067114 Query 22938 TCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCC-C 22996 | | ||| | ||||||| | || | | ||||| || | || | Sbjct 2067115 TTAGGTTGCGAGTCACAACCTGAGTGACCTCATGAAGACGACCGAAGTCATATTCACCTC 2067174 Query 22997 GA--TTGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGT 23054 || ||| | || || | || || | ||||| |||||||| || || ||||| | Sbjct 2067175 GAGCTTGGTCGACGAATGTCGGGAGAGCCAGGGAGGCCAGATTGCACACAGCGACCTCAT 2067234 Query 23055 CTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAAT 23114 | | |||||| || ||||| || || || |||||| | || || ||||| | Sbjct 2067235 CGGGAGCCGTGTATTCGACAATCTCAGTGCAAAGATTGGAGCTTCGGATGGTCCCCAAGT 2067294 Query 23115 TGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCT 23174 | |||||||||| |||| |||||| | |||||||||||||| || ||||| || || | Sbjct 2067295 TCTTCTGGTTGCTCTTTCTATTGCAGGCGTCCTTGTAGAGCATATAGGGCGTCCCAGTTT 2067354 Query 23175 CGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTAC- 23233 || ||| | ||||| ||| || ||| | ||||||| | ||| ||| || | Sbjct 2067355 CGGTCTGTGCCTCGAGGATAGCATACCATAGTTTCTGAGCCTTTACA-GTCTGGCGACCA 2067413 Query 23234 CTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCC 23293 | ||| || | ||| || | | ||| | |||| || ||| |||| || |||||| Sbjct 2067414 CGGCCCTCCTTCTCATATCTCTCGTATAGAGCGTTGAACTCGTCACCATAGACGTCGGCA 2067473 Query 23294 AGGCCGGGCGATTGCATC-GGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCT 23352 ||||| || | | ||| ||||| | |||| |||| | || || || || ||| Sbjct 2067474 AGGCCAGGTGCCT-CATGAGGACAGAAGAGAGTCCATTCTTGGTTCTTCTCGACACGTTC 2067532 Query 23353 CATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTT 23412 ||| || | || || |||| | |||||||||| ||||| || | ||||| || || Sbjct 2067533 CATGAACAAGTCAGGAGTCCACATGGCGTAGAACAAGTCGCGTGCTCTAACCTCTTCCTT 2067592 Query 23413 GCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTA 23472 |||| ||||||| ||| | ||||||||| |||||||| || ||||| ||||||||||| Sbjct 2067593 GCCGTGGTTCTTTCTCAGGTTCAAAAAGTCGAACACGTCTGCGTGCCATGGCTCGAGGTA 2067652 Query 23473 AACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTT 23532 | |||||| || || || | ||||||||| |||||||||||||| || || || || || Sbjct 2067653 GATGGCAAAAGCACCTGGGCGCTTATTGCCACCCTGATCGACGTAGCGAGCAGTATTATT 2067712 Query 23533 GTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGA 23592 | | || | ||||| || | || |||||||| | ||| ||| || | || Sbjct 2067713 GAAGACGCGAAGCATGGGGATAAGCCCGTTGGAGGTGCCATTGGTGCCTGCAATGTAGGA 2067772 Query 23593 ACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCAT 23652 ||| | || |||| | || | | || ||| || ||||| | | || || ||||| Sbjct 2067773 TCCTGTGGCACGAATGCAATGGGCATTGAGACCAATACCTCCAGCTGTCTTGGAGATCAT 2067832 Query 23653 CGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAA 23712 || || || || ||||| || || |||||||||||||| ||||| | | | ||| Sbjct 2067833 GGCACAAGTCTTGAGGGTGTCATATATTCCCTCGATGCTGTCTTCTTTCATGTCAATCAA 2067892 Query 23713 GAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTG 23772 |||||| || |||| ||| | || || || |||| ||| || || || ||||| Sbjct 2067893 GAAACAGGAGGACAGTTGAGGTTGAGGGGTTCCGGCGTTGAAAAGGGTGGGCGAAGCGTG 2067952 Query 23773 CGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCC 23832 |||||| | | ||||| ||||||||||| |||||||| ||||| || || | Sbjct 2067953 GGTAAAGCACTTCTGGGACATGAGATTGTACGTCTCGATGGCCTTTTCAATATCGTCGCT 2068012 Query 23833 GTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTC--TCTCGACCGTGA-CGCC 23889 ||| ||||| | || || ||||| | ||||| ||| || | || | | ||| ||| Sbjct 2068013 GTGAATACCCACTGCCACACGCATAAGCATGTGTTGGGGCCGTTCAGCAACTTGATTGCC 2068072 Query 23890 GTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAA 23949 ||| |||| ||| ||||| | | || ||| || || |||||||| | ||||| || Sbjct 2068073 ---AATCTTGAGCAGGTATGATCTCTCCAGCGTCTTGAAACCAAAATATTGGTAGTTGAA 2068129 Query 23950 GTCACGATCGTGCACTATGGCCGAATTCAA 23979 ||| || |||| || || || || || || Sbjct 2068130 GTCTCGGTCGTAGACAATTGCAGAGTTGAA 2068159 >seq1 Length=8230860 Score = 178 bits (196), Expect = 1e-39 Identities = 345/502 (69%), Gaps = 8/502 (2%) Strand=Plus/Minus Query 57792 TTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTAC 57851 |||||||| || || || | || || |||||||| || ||||| || || || Sbjct 2004801 TTTCAAGTCATGATGGAGAATATCCACTCGGAAATGTACAGCCTTCTCATTGACACCTAT 2004742 Query 57852 GTGAAGGACAACGACGAGAA-ACGTAGACTGTTCAACGCGATCGAAACAATGCCC-GCGA 57909 || |||||| | | ||||| || || |||||| |||| ||||| ||||| || || Sbjct 2004741 GTAAAGGACCCCAAAGAGAAGACATAT-CTGTTCGACGCCATCGACACAATCCCTTGCAT 2004683 Query 57910 TCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCG 57969 |||| ||||| ||||| ||| | | ||||||| | | | | | || ||| Sbjct 2004682 TCGC-AAGAAAGCAGACTGGGCTCTGCGATGGATATCAGACAAAGAGTCGAGCTTTGCCC 2004624 Query 57970 AGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAA 58029 | | ||| | || ||||| ||||||||||| || ||||| || || |||||| | | Sbjct 2004623 AACGACTAGTGGCTTTCGCAGCCGTCGAAGGCATCTTCTTCTCTGGATCCTTTGCATCCA 2004564 Query 58030 TATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATAT 58089 | || ||| |||||| || |||||||||||||| || || ||||||| | || | Sbjct 2004563 TCTTCTGGCTGAAGAGCAAAGGACTGATGCCCGGCCTCACCTTCTCCAACGAGCTCATCT 2004504 Query 58090 CGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCA--A 58147 | || |||||||| | || || || ||||||||||| | | | |||| || | Sbjct 2004503 CTCGTGACGAGGGCATGCACACGGACTTTGCGTGCCT--TTTGATGCAACATCTGCAGCA 2004446 Query 58148 TAAACCGACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGA 58207 || ||| | | | |||| ||||||| ||||| || ||| ||||||||| || Sbjct 2004445 CAAGCCGGACCCACAACTCATCGAAAACATTATAACCGAAGCCGTCAGGATCGAAAAGGA 2004386 Query 58208 GTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAA 58267 || ||||||| ||||| || || || ||||||| |||||| | | |||| | Sbjct 2004385 ATTCCTCACCGATGCCCTCCCCGTCGCACTGCTCGGCATGAACTCGAAGCTCATGTGTCA 2004326 Query 58268 GTACATTGAGTTTGTTGCCGAC 58289 |||||||||||||||||| ||| Sbjct 2004325 GTACATTGAGTTTGTTGCTGAC 2004304 >seq7 Length=4110827 Score = 123 bits (136), Expect = 2e-23 Identities = 169/233 (73%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||||||||| || || ||||| |||||||| | || |||||| || Sbjct 1063352 CATGCAAATCTTCGTAAAGACACTTACTGGCAAGACGATCACGCTGGAGGTTGAATCGAG 1063293 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAG-AATAGC--GGACAAGGAAGGCGTGCCGCCCGA 31308 ||||| |||| | ||||| ||| || | | |||||||||||| | |||||||| Sbjct 1063292 CGACACGATCGACAACGTCAA---GAGCAAGATCCAGGACAAGGAAGGGATCCCGCCCGA 1063236 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 ||||||||| || || || || ||||| ||| |||| ||| || | || || Sbjct 1063235 CCAGCAGCGCCTGATCTTTGCGGGCAAGCAGCTGGAGGACGGCCGCACGCTCTCGGACTA 1063176 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || |||||||| || ||||| || || | || | ||||||| Sbjct 1063175 CAACATCCAGAAGGAATCGACGCTCCATCTCGTGCTCCGGCTCCGCGGCGGTA 1063123 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||||||||| || || ||||| ||||| || | || || || || Sbjct 1063123 ATGCAAATCTTCGTAAAGACACTTACTGGCAAGACGATTACGCTGGAGGTGGAGAGCTCA 1063064 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| || || ||||||||| ||| | || || |||||| Sbjct 1063063 GACACGATCGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAG 1063004 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || ||||| ||||| |||||||| ||| |||| | ||||| || ||| Sbjct 1063003 CAGCGGCTGATTTTCGCGGGCAAGCAGTTGGAGGACGGGCGGACTCTCAGCGACTACAAC 1062944 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || || || || | || |||| || |||||| | ||||| Sbjct 1062943 ATCCAGAAGGAGAGCACGTTGCACTTGGTGCTGAGACTGCGTGGCGG 1062897 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| ||||| || || ||||| || ||||| | || || || | Sbjct 1063580 CATGCAAATCTTCGTGAAGACACTTACTGGCAAGACCATCACGCTTGAGGTCGAGTCCAG 1063521 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||| | |||||| | || ||||||||| ||| | || || ||||| Sbjct 1063520 CGACACGATCGACAATGTCAAATCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCA 1063461 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || ||||| ||||| || | |||||| || || ||| || || Sbjct 1063460 GCAGCGCCTGATCTTCGCCGGCAAGCAACTCGAAGACGGCCGCACCCTGTCCGACTACAA 1063401 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || ||||| || || ||||| || Sbjct 1063400 CATCCAGAAGGAGTCGACCCTGCACCTGGTCCT 1063368 >seq6 Length=4175021 Score = 93.3 bits (102), Expect = 4e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 31202 TTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTC 31261 ||||| ||||| || || ||||| || |||||| | || || || ||||||||| || Sbjct 1382970 TTCGTCAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGTCGTCCGACACGATC 1383029 Query 31262 GAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTA 31321 || | ||||| | || |||||||||||| | ||||||||||||||||| | Sbjct 1383030 GACAACGTCAAGTCCAAGATCCAAGACAAGGAAGGCATCCCGCCCGACCAGCAGCGATTG 1383089 Query 31322 ATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAA 31380 || ||||| ||||| || | ||||| ||| ||||||| || ||||| || || Sbjct 1383090 ATCTTCGCCGGCAAGCAACTTGAAGATGGCCGAACTCTGAGCGACTACAACATCCAGAA 1383148 >seq5 Length=4609732 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| |||||| | ||||| || || | ||| |||||||| | || ||||| || Sbjct 1365203 CATGCAGATTTTCATGAAGACACTTACTGTCAAGACGATCACGCTGGAGGTTGAGTCGAG 1365144 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| || | | |||| | || |||||||||||| | | ||||||| Sbjct 1365143 CGACACAATCAACAACATCAAGAGCAAGATTTAGGACAAGGAAGGGATCACATCCGACCA 1365084 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || || || ||||| ||| |||| ||| || | | ||| || || Sbjct 1365083 GCAGCGCCTGATCTTTGCGGGCAAGCAGCTGGAGGACGGCCGCACCAGGTCCGACTACAA 1365024 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||| || || |||||||| || ||||| || Sbjct 1365023 CATCCAGAAGGAATCGACGCTCCATCTCGT 1364994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445764856533840