Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000835495.1_202015-02- 23] 277 sequences; 43,029,152 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2 235 7e-57 seq1 100 4e-16 >seq2 Length=7068955 Score = 235 bits (260), Expect = 7e-57 Identities = 750/1148 (65%), Gaps = 30/1148 (3%) Strand=Plus/Plus Query 62949 GATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 63008 || |||||||| ||||| || ||||||| | | ||| |||| | |||||||||||| Sbjct 2067207 GAGGCCAGATTGCACACAGCGACCTCATCGGGAGCCGTGTATTCGACAATCTCAGTGCAA 2067266 Query 63009 AGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 63068 ||||| | ||| || || || || | || || |||||| | || || || ||| Sbjct 2067267 AGATTGGAGCTTCGGATGGTCCCCAAGTTCTTCTGGTTGCTCTTTCTATTGCAGGCGTCC 2067326 Query 63069 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 63128 || || || || | || || |||||||| |||| | || | || || | ||| | | Sbjct 2067327 TTGTAGAGCATATAGGGCGTCCCAGTTTCGGTCTGTGCCTCGAGGATAGCATACCATA-G 2067385 Query 63129 ACTC-GAGCCTTTATTATA----GATTT-GTATCTCCTT----TCTCTTTCGTATAGAGT 63178 || ||||||||| | || | |||||| | ||| |||||||||| Sbjct 2067386 TTTCTGAGCCTTTACAGTCTGGCGACCACGGCCCTCCTTCTCATATCTCTCGTATAGAG- 2067444 Query 63179 ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACA 63238 |||| ||||||||| || | || | | | | | ||| |||| ||||| Sbjct 2067445 -------CGTT-GAACTCGTCACCATAGACGTCGGCAAGGCCAGGTGCCTCATGAGGACA 2067496 Query 63239 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 63298 | | | ||| ||| || | || || |||| ||| || | |||||| |||| | Sbjct 2067497 GAAGAGAGTCCATTCTTGGTTCTTCTCGACACGTTCCATGAACAAGTCAGGAGTCCACAT 2067556 Query 63299 AGC-TATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 63357 || || || || || | || |||| || || || || |||||| | || | | Sbjct 2067557 GGCGTAGAACAAG-TCGCGTGCTCTAACCTCTTCCTTGCCGTGGTTCTTTCTCAGGTTCA 2067615 Query 63358 GGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTT 63417 || | | | || | ||||| || || | ||| ||||| | | | || || || | Sbjct 2067616 AAAAGTCGAACACGTCTGCGTGCCATGGCTCGAGGTAGATGGCAAAAGCACCTGGGCGCT 2067675 Query 63418 TGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAA 63477 | || || |||||||| | ||| | ||| || ||||| | || | | ||| || |||| Sbjct 2067676 TATTGCCACCCTGATCGACGTAGCGAGCAGTATTATTGAAGACGCGAAGCATGGGGATAA 2067735 Query 63478 TACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAAT--ATTACT 63535 ||||| || | |||||||| || | || ||| ||| |||||||||| | | Sbjct 2067736 GCCCGTTGGAGGTGCCATTGGTGCCTGCAATGTAGGATCCTGTGGCACGAATGCAATGGG 2067795 Query 63536 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTC 63595 ||||| |||| || || || || | || ||||| | || || || | ||||| Sbjct 2067796 CATTGA--GACCAATACCTCCAGCTGTCTTGGAGATCATGGCACAAGTCTTGAGGGTGTC 2067853 Query 63596 ATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 63655 ||| || || || ||||| || || |||||| || | |||||| |||| ||| | Sbjct 2067854 ATATATTCCCTCGATGCTGTCTTCTTTCATGTCAATCAAGAAACAGGAGGACAGTTGAGG 2067913 Query 63656 ACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAG 63715 ||| ||||| || || || | ||| || |||||||| ||||| || || | || | Sbjct 2067914 TTGAGGGGTTCCGGCGTTGAAAAGGGTGGGCGAAGCGTGGGTAAAGCACTTCTGGGACAT 2067973 Query 63716 TAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACAC 63774 |||||||||||||| || || || ||||| | || ||||| || ||||| |||| Sbjct 2067974 GAGATTGTACGTCTCGATGGCCTTTTCAATATCGTCGCTG-TGAATACCCACTGCCACAC 2068032 Query 63775 GCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATT 63834 |||| | |||||| || || | |||| ||| || ||| || || | || ||| ||| Sbjct 2068033 GCATAAGCATGTGTTGGGGCCGTTCAGCAACTTGATTGCCAATCTTGAGCAGGTATGATC 2068092 Query 63835 TTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCG 63894 | |||| || || ||||||||||| | ||| |||||||| ||||| | ||| | | Sbjct 2068093 TCTCCAGCGTCTTGAAACCAAAATATTGGTAGTTGAAGTCTCGGTCGTAGACAATTGCAG 2068152 Query 63895 AATTGAGCTTATCCTTATATTTGTTAACTATATCCATGGTAATACTT-GAAATAATCGGA 63953 | |||| || ||| | | | | || | || | | | | ||| || || ||||| Sbjct 2068153 AGTTGAACTCATCAGCGTGTCTCATGAC-ACATTCGTAGGTCTCCTTGGAGATCATCGGG 2068211 Query 63954 GAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAAT 64013 || ||||| |||||| ||||| ||||||| | | | ||| | ||| |||| Sbjct 2068212 GAGGGTTTCTGATTTTTCGGATTGACATAGTGGTAGAGGTCCGAGACCACGGAGGAAAAT 2068271 Query 64014 AGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAA 64073 | || || || | ||||| || ||||| | || || | || || || | ||||| Sbjct 2068272 TGCTTCTTGGTCTGTTTGTGGAGGTTTGAAACAGCGATACGTGCTGCGAGGACTGCATAG 2068331 Query 64074 TCCGGATG 64081 || ||||| Sbjct 2068332 TCGGGATG 2068339 >seq1 Length=8230860 Score = 100 bits (110), Expect = 4e-16 Identities = 222/330 (67%), Gaps = 6/330 (2%) Strand=Plus/Plus Query 33575 CATCAAA---CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGA 33631 ||||||| || || || || ||||| |||||||| | | || | ||||| || Sbjct 2004460 CATCAAAAGGCACGCAAAGTCCGTGTGCATGCCCTCGTCACGAGAGATGAGCTCGTTGGA 2004519 Query 33632 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCC 33691 || ||||| |||||||| || || | || ||||| || ||||| || || ||||| Sbjct 2004520 GAAGGTGAGGCCGGGCATCAGTCCTTTGCTCTTCAGCCAGAAGATGGATGCAAAGGATCC 2004579 Query 33692 GGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC-CGGCGC 33750 || |||||||| ||||| || || || || || | |||| | || | | || | | Sbjct 2004580 AGAGAAGAAGATGCCTTCGACGGCTGCGAAAGCCACTAGTCGTTGGGCAAAGCTCGACTC 2004639 Query 33751 T--GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 33808 | ||| |||||| ||||||| || || ||||| | ||||| || || || Sbjct 2004640 TTTGTCTGATATCCATCGCAGAGCCCAGTCTGCTTTCTTGCGAATGCAAGGGATTGTGTC 2004699 Query 33809 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAG 33868 ||||| | || ||||| | || || || || || ||||| || || || | ||| Sbjct 2004700 GATGGCGTCGAACAGATATGTCTTCTCTTTGGGGTCCTTTACATAGGTGTCAATGAGAAG 2004759 Query 33869 ACTATACATTTCCGAATGAATGTTTTCAAT 33898 || ||||||||||| || || || || || Sbjct 2004760 GCTGTACATTTCCGAGTGGATATTCTCCAT 2004789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629815419256560