Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000835495.1_202015-02- 23] 277 sequences; 43,029,152 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2 208 1e-48 >seq2 Length=7068955 Score = 208 bits (230), Expect = 1e-48 Identities = 746/1144 (65%), Gaps = 22/1144 (2%) Strand=Plus/Plus Query 71704 GATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAA 71763 || |||||||| || || || ||||||| | | | | |||| | ||| ||||||||| Sbjct 2067207 GAGGCCAGATTGCACACAGCGACCTCATCGGGAGCCGTGTATTCGACAATCTCAGTGCAA 2067266 Query 71764 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 71823 ||||| | |||||| || || || | || || |||||| | || || || ||| Sbjct 2067267 AGATTGGAGCTTCGGATGGTCCCCAAGTTCTTCTGGTTGCTCTTTCTATTGCAGGCGTCC 2067326 Query 71824 TTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 71883 || || || ||| | || || |||||||| |||| | || | || || | ||| | | Sbjct 2067327 TTGTAGAGCATATAGGGCGTCCCAGTTTCGGTCTGTGCCTCGAGGATAGCATACCATA-G 2067385 Query 71884 ACTC-GAGCCTTTATTATATTCTTGT-ATCTCTTTTCTCTTTCGTAT-TGTGTA-TATA- 71938 || ||||||||| | ||| | | | | ||| ||| || | | | |||| Sbjct 2067386 TTTCTGAGCCTTTAC---AGTCTGGCGACCACGGCCCTCCTTCTCATATCTCTCGTATAG 2067442 Query 71939 ATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCA 71998 | |||| ||||||||| || | | | | | | ||||| |||| ||||| | | Sbjct 2067443 AGCGTT-GAACTCGTCACCATAGACGTCGGCAAGGCCAGGTGCCTCATGAGGACAGAAGA 2067501 Query 71999 ATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-T 72057 | ||| ||| | | | || |||| ||| || | |||||| |||| | || | Sbjct 2067502 GAGTCCATTCTTGGTTCTTCTCGACACGTTCCATGAACAAGTCAGGAGTCCACATGGCGT 2067561 Query 72058 ATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 72117 | || || || | | |||| ||| || || || |||||| | || | | || Sbjct 2067562 AGAACAAG-TCGCGTGCTCTAACCTCTTCCTTGCCGTGGTTCTTTCTCAGGTTCAAAAAG 2067620 Query 72118 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTT 72177 | | | || | ||||| || || | ||| ||||| | | | || || || || || Sbjct 2067621 TCGAACACGTCTGCGTGCCATGGCTCGAGGTAGATGGCAAAAGCACCTGGGCGCTTATTG 2067680 Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 || |||||||| | ||| | ||| || ||||| | || | | ||| || |||| || Sbjct 2067681 CCACCCTGATCGACGTAGCGAGCAGTATTATTGAAGACGCGAAGCATGGGGATAAGCCCG 2067740 Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGCTAATTG 72295 ||||| | |||||||| || | || ||| ||| |||||||||| | || |||| Sbjct 2067741 TTGGAGGTGCCATTGGTGCCTGCAATGTAGGATCCTGTGGCACGAATGCAATGGGCATTG 2067800 Query 72296 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGA 72355 | |||| || || || || | || ||||| | || || || | || ||||| | Sbjct 2067801 A--GACCAATACCTCCAGCTGTCTTGGAGATCATGGCACAAGTCTTGAGGGTGTCATATA 2067858 Query 72356 TGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 72415 | ||||| || || || || |||||| || | |||||| |||| ||| | || Sbjct 2067859 TTCCCTCGATGCTGTCTTCTTTCATGTCAATCAAGAAACAGGAGGACAGTTGAGGTTGAG 2067918 Query 72416 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGAT 72475 ||||| || || || | ||| || |||||||| ||||| || || | |||| |||| Sbjct 2067919 GGGTTCCGGCGTTGAAAAGGGTGGGCGAAGCGTGGGTAAAGCACTTCTGGGACATGAGAT 2067978 Query 72476 TGTACGTCTCAATAGCTGATTCTATATC-CCATTGATGTATTCCTACCGCGACACGCATT 72534 |||||||||| || || ||| ||||| | || || || || || || |||||||| Sbjct 2067979 TGTACGTCTCGATGGCCTTTTCAATATCGTCGCTG-TGAATACCCACTGCCACACGCATA 2068037 Query 72535 AACATATGCTGAGGTCTTTCAACGATCTTG-TTATTTATTTTCAACAAGTAGGATTTTTC 72593 | ||| || || || | |||| | | |||| || || || | || ||| ||| | || Sbjct 2068038 AGCATGTGTTGGGGCCGTTCAGC-AACTTGATTGCCAATCTTGAGCAGGTATGATCTCTC 2068096 Query 72594 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATT 72653 || || || ||||||||||| | ||| |||||||| ||||| | ||| | || || Sbjct 2068097 CAGCGTCTTGAAACCAAAATATTGGTAGTTGAAGTCTCGGTCGTAGACAATTGCAGAGTT 2068156 Query 72654 GAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACTT-GAAATAATCGGAGAAT 72712 || | ||| | | | | || | || | | | | ||| || || ||||| || Sbjct 2068157 GAACTCATCAGCGTGTCTCATGAC-ACATTCGTAGGTCTCCTTGGAGATCATCGGGGAGG 2068215 Query 72713 GTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtt 72772 ||||| |||||| ||||| ||||||| | | | ||| | ||| |||| | | Sbjct 2068216 GTTTCTGATTTTTCGGATTGACATAGTGGTAGAGGTCCGAGACCACGGAGGAAAATTGCT 2068275 Query 72773 tttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTG 72832 | || || | ||||| || ||||| || || || | || || || | ||||| || | Sbjct 2068276 TCTTGGTCTGTTTGTGGAGGTTTGAAACAGCGATACGTGCTGCGAGGACTGCATAGTCGG 2068335 Query 72833 GATG 72836 |||| Sbjct 2068336 GATG 2068339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671136876180520