Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000835495.1_202015-02- 23] 277 sequences; 43,029,152 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1 176 7e-39 seq2 118 2e-21 >seq1 Length=8230860 Score = 176 bits (194), Expect = 7e-39 Identities = 356/520 (68%), Gaps = 19/520 (4%) Strand=Plus/Minus Query 125244 TTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTAC 125303 || ||| ||||||| ||||| | ||||||||||||||| || ||||||| || Sbjct 2004801 TTTCAAGTCATGATGGAGAATATCCACTCGGAAATGTACAGCCTTCTCATTGACACCTAT 2004742 Query 125304 ATTCGCGATCCGCAACGTAAACACATG-CTCTTTAACGCAATCGACACGGTGCCGTCTAT 125362 | || || ||| | || |||| || || |||| |||||||| | || | || Sbjct 2004741 GTAAAGGACCC-CAAAGAGAAGACATATCTGTTCGACGCCATCGACACAATCCCTTGCAT 2004683 Query 125363 ACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGA 125422 || || || || | |||| | || ||||| ||| | |||| | ||| | Sbjct 2004682 TCGCAAGAAAGCAGACTGGGCTCTGCGATGGATATCAGACAAAGAGTCGAGCTTTGCCCA 2004623 Query 125423 CAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCAT 125482 |||| ||||| ||||| ||||| || ||||||||||| || || ||||| |||| Sbjct 2004622 ACGACTAGTGGCTTTCGCAGCCGTCGAAGGCATCTTCTTCTCTGGATCCTTTGCATCCAT 2004563 Query 125483 CTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATC 125542 ||| ||||| |||| ||||| |||||||| || || | |||||| | || || Sbjct 2004562 CTTCTGGCTGAAGAGCAAAGGACTGATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTC 2004503 Query 125543 TCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCC 125602 ||| ||||||||| | ||| |||||||| || || | ||||| |||||| | Sbjct 2004502 TCGTGACGAGGGCATGCACACGGACTTTGCGTGCCTTTTGAT--GCAAC-ATCTGCAGCA 2004446 Query 125603 CGAGTGCAGATCCAGCGATGAAAAGGTCATC---AACATTGTAACCGATGCCGTGAGGAT 125659 | || | || || | | ||||| |||||| ||||||| ||||| ||||| Sbjct 2004445 CAAG-CCGGACCC--------ACAACTCATCGAAAACATTATAACCGAAGCCGTCAGGAT 2004395 Query 125660 AGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCA-TGATTGGCATGAACTGCAAGC 125718 ||| | || || || ||||| |||| || ||| ||| || | |||||||||| |||| Sbjct 2004394 CGAAAAGGAATTCCTCACCGATGCCCTCCCCGTC-GCACTGCTCGGCATGAACTCGAAGC 2004336 Query 125719 TAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACT 125758 | ||||| ||||||| |||||||| || || ||||| || Sbjct 2004335 TCATGTGTCAGTACATTGAGTTTGTTGCTGACCGTCTGCT 2004296 >seq2 Length=7068955 Score = 118 bits (130), Expect = 2e-21 Identities = 320/486 (66%), Gaps = 8/486 (2%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| |||||||| || ||||| ||| | ||| ||||| | || || |||||||| ||| Sbjct 2067688 CAGGGTGGCAATAAGCGCCCAGGTGCTTTTGCCATCTACCTCGAGCCATGGCACGCAGAC 2067629 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || |||||| | | || | || ||| ||| ||||||| |||| | ||| Sbjct 2067628 GTGTTCGACTTTTTGAACCTGAGAAAGAACCACGGCAAGGAAGAGGTTAGAGCACGCGAC 2067569 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC---AACGACGGTGGC 97052 ||||| || || | ||| || || ||||||||| | || ||| || || | Sbjct 2067568 TTGTTCTACGCCATGTGGACTCCTGACTTGTTCATGGAACGTGTCGAGAAGAACCAAG-- 2067511 Query 97053 TACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAG 97112 | |||| || | || || | | |||| || || |||| || || || ||| Sbjct 2067510 -AATGGACTCTCTTCTGTCCTCATGAGGCACCTGGCCTTGCCGACGTCTATGGTGACGAG 2067452 Query 97113 TTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATA-CGTGAGACGAGTCGATGC 97171 || | || ||| | || ||| | |||||||| || |||| || | || Sbjct 2067451 TTCAACGCTCTATACGAGAGATATGAGAAGGAGGGCCGTGGTCGCCAGACT-GTAAAGGC 2067393 Query 97172 ACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCT 97231 | |||| ||| | || ||| | ||| ||| || ||||| || || || || || Sbjct 2067392 TCAGAAACTATGGTATGCTATCCTCGAGGCACAGACCGAAACTGGGACGCCCTATATGCT 2067333 Query 97232 CTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTC 97291 ||||||||| || ||| | || |||||||| ||||||| |||||| |||| Sbjct 2067332 CTACAAGGACGCCTGCAATAGAAAGAGCAACCAGAAGAACTTGGGGACCATCCGAAGCTC 2067273 Query 97292 CAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCT 97351 |||||| ||||| || ||||| || ||| | |||| || ||| || || ||| ||| Sbjct 2067272 CAATCTTTGCACTGAGATTGTCGAATACACGGCTCCCGATGAGGTCGCTGTGTGCAATCT 2067213 Query 97352 GGCATC 97357 ||| || Sbjct 2067212 GGCCTC 2067207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741056634082520