Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000835495.1_202015-02- 23] 277 sequences; 43,029,152 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq6 154 2e-33 seq7 120 5e-23 >seq6 Length=4175021 Score = 154 bits (170), Expect = 2e-33 Identities = 160/207 (77%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||| ||| |||| |||||| || ||||||||||| ||||||||||| || || Sbjct 1532847 GCTAAGCGTCACCGCAAGAT-TCTTCGCGACAACATCCAAGGTATCACCAAGCCTGCCAT 1532905 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| ||||| ||||| || ||||||||| |||| | || |||| ||||||| Sbjct 1532906 CCGACGTCTCGCTCGCCGTGGCGGTGTCAAGCGTATCTCGGCCATGATCTACGAAGAGAC 1532965 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| |||||| | |||| || | ||| || || ||| ||||| Sbjct 1532966 CCGCGGTGTCCTCAAGTCTTTCCTCGAATCCGTCATTCGTGACGCCGTCACCTACACCGA 1533025 Query 16612 GCACGCTAAACGTAAGACTGTCACCTC 16638 |||||| || | ||||||||||| || Sbjct 1533026 GCACGCAAAGAGAAAGACTGTCACTTC 1533052 >seq7 Length=4110827 Score = 120 bits (132), Expect = 5e-23 Identities = 104/128 (81%), Gaps = 1/128 (1%) Strand=Plus/Plus Query 16448 AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGT 16507 |||| |||||| || ||||||||||| ||||||||||| || || || ||||| |||||| Sbjct 3143376 AGAT-TCTTCGTGACAACATCCAAGGTATCACCAAGCCCGCCATTCGACGTCTCGCTCGT 3143434 Query 16508 CGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAG 16567 |||||||| ||||||||| |||| | || |||| ||||||| |||| ||| | ||| Sbjct 3143435 CGTGGTGGTGTCAAGCGTATCTCGGCCATGATCTACGAAGAGACCCGTGGTGTCCTCAAG 3143494 Query 16568 ATCTTCCT 16575 | |||||| Sbjct 3143495 ACCTTCCT 3143502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074946736961