Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000835495.1_202015-02- 23] 277 sequences; 43,029,152 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2 226 4e-54 seq1 114 2e-20 >seq2 Length=7068955 Score = 226 bits (250), Expect = 4e-54 Identities = 750/1149 (65%), Gaps = 32/1149 (3%) Strand=Plus/Plus Query 62898 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 62957 || |||||||| || || || ||||||| | | ||| |||| | |||||||||||| Sbjct 2067207 GAGGCCAGATTGCACACAGCGACCTCATCGGGAGCCGTGTATTCGACAATCTCAGTGCAA 2067266 Query 62958 AGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 63017 ||||| | ||| || || || || | || || |||||| | || || || ||| Sbjct 2067267 AGATTGGAGCTTCGGATGGTCCCCAAGTTCTTCTGGTTGCTCTTTCTATTGCAGGCGTCC 2067326 Query 63018 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 63077 || || || || | || || |||||||| |||| | || | || || | ||| | | Sbjct 2067327 TTGTAGAGCATATAGGGCGTCCCAGTTTCGGTCTGTGCCTCGAGGATAGCATACCATA-G 2067385 Query 63078 ACTC-GAGCCTTTATTATA----GATTT-GTATCTCCTT----TCTCTTTCGTATAGTGT 63127 || ||||||||| | || | |||||| | ||| |||||||| | Sbjct 2067386 TTTCTGAGCCTTTACAGTCTGGCGACCACGGCCCTCCTTCTCATATCTCTCGTATAGAG- 2067444 Query 63128 ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACA 63187 |||| ||||||||| || | || | | | | ||||| |||| ||||| Sbjct 2067445 -------CGTT-GAACTCGTCACCATAGACGTCGGCAAGGCCAGGTGCCTCATGAGGACA 2067496 Query 63188 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 63247 | | | ||| ||| || | || || |||| ||| || | |||||| |||| | Sbjct 2067497 GAAGAGAGTCCATTCTTGGTTCTTCTCGACACGTTCCATGAACAAGTCAGGAGTCCACAT 2067556 Query 63248 AGC-TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 63306 || || || || || | | |||| || || || || |||||| | || | | Sbjct 2067557 GGCGTAGAACAAG-TCGCGTGCTCTAACCTCTTCCTTGCCGTGGTTCTTTCTCAGGTTCA 2067615 Query 63307 GGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTT 63366 || | | | || | ||||| || || | ||| ||||| | | | || || || | Sbjct 2067616 AAAAGTCGAACACGTCTGCGTGCCATGGCTCGAGGTAGATGGCAAAAGCACCTGGGCGCT 2067675 Query 63367 TGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAA 63426 | || || |||||||| | ||| | ||| || ||||| | || | | ||| || |||| Sbjct 2067676 TATTGCCACCCTGATCGACGTAGCGAGCAGTATTATTGAAGACGCGAAGCATGGGGATAA 2067735 Query 63427 TACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAAT--ATTACT 63484 ||||| || | |||||||| || | || ||| ||| |||||||||| | | Sbjct 2067736 GCCCGTTGGAGGTGCCATTGGTGCCTGCAATGTAGGATCCTGTGGCACGAATGCAATGGG 2067795 Query 63485 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTC 63544 ||||| |||| || || || || | || ||||| | || || || | ||||| Sbjct 2067796 CATTGA--GACCAATACCTCCAGCTGTCTTGGAGATCATGGCACAAGTCTTGAGGGTGTC 2067853 Query 63545 ATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 63604 ||| || ||||| ||||| || || |||||| || | |||||| |||| ||| | Sbjct 2067854 ATATATTCCCTCGATGCTGTCTTCTTTCATGTCAATCAAGAAACAGGAGGACAGTTGAGG 2067913 Query 63605 ACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAG 63664 || ||||| || || || | ||| || |||||||| ||||| || || | || | Sbjct 2067914 TTGAGGGGTTCCGGCGTTGAAAAGGGTGGGCGAAGCGTGGGTAAAGCACTTCTGGGACAT 2067973 Query 63665 TAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACAC 63723 |||||||||||||| || || || ||||| | || ||||| || ||||| |||| Sbjct 2067974 GAGATTGTACGTCTCGATGGCCTTTTCAATATCGTCGCTG-TGAATACCCACTGCCACAC 2068032 Query 63724 GCATTAACATGTGCTGAGGTCTTTCAACGATCTTG-TTGTTTATTTTCAACAAGTAGGAT 63782 |||| | |||||| || || | |||| | | |||| ||| || || | || ||| ||| Sbjct 2068033 GCATAAGCATGTGTTGGGGCCGTTCAGC-AACTTGATTGCCAATCTTGAGCAGGTATGAT 2068091 Query 63783 TTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACC 63842 | |||| || || ||||||||||| | ||| |||||||| ||||| | ||| | Sbjct 2068092 CTCTCCAGCGTCTTGAAACCAAAATATTGGTAGTTGAAGTCTCGGTCGTAGACAATTGCA 2068151 Query 63843 GAGTTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACTT-GAAATAATCGG 63901 ||||||| | ||| | | | | || | || | | | | ||| || || ||||| Sbjct 2068152 GAGTTGAACTCATCAGCGTGTCTCATGAC-ACATTCGTAGGTCTCCTTGGAGATCATCGG 2068210 Query 63902 AGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAA 63961 || ||||| |||||| ||||| ||||||| | | | ||| | ||| ||| Sbjct 2068211 GGAGGGTTTCTGATTTTTCGGATTGACATAGTGGTAGAGGTCCGAGACCACGGAGGAAAA 2068270 Query 63962 TAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATA 64021 | | || || || | ||||| || ||||| || || || | || || || | ||||| Sbjct 2068271 TTGCTTCTTGGTCTGTTTGTGGAGGTTTGAAACAGCGATACGTGCTGCGAGGACTGCATA 2068330 Query 64022 ATCCGGATG 64030 || ||||| Sbjct 2068331 GTCGGGATG 2068339 >seq1 Length=8230860 Score = 114 bits (126), Expect = 2e-20 Identities = 225/330 (68%), Gaps = 6/330 (2%) Strand=Plus/Plus Query 33297 CATCAAA---CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGA 33353 ||||||| || || || || ||||| |||||||| | | || || |||||||| Sbjct 2004460 CATCAAAAGGCACGCAAAGTCCGTGTGCATGCCCTCGTCACGAGAGATGAGCTCGTTGGA 2004519 Query 33354 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCC 33413 || ||||| |||||||| || || | || ||||| || ||||| || || ||||| Sbjct 2004520 GAAGGTGAGGCCGGGCATCAGTCCTTTGCTCTTCAGCCAGAAGATGGATGCAAAGGATCC 2004579 Query 33414 AGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC-CGGCGC 33472 ||| |||||||| ||||| || || || || || | |||| | || | | || | | Sbjct 2004580 AGAGAAGAAGATGCCTTCGACGGCTGCGAAAGCCACTAGTCGTTGGGCAAAGCTCGACTC 2004639 Query 33473 T--GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 33530 | ||| |||||| ||||||| || || ||||| | ||||| || || || Sbjct 2004640 TTTGTCTGATATCCATCGCAGAGCCCAGTCTGCTTTCTTGCGAATGCAAGGGATTGTGTC 2004699 Query 33531 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAG 33590 ||||| | || ||||| | || || || || || ||||| || || || | ||| Sbjct 2004700 GATGGCGTCGAACAGATATGTCTTCTCTTTGGGGTCCTTTACATAGGTGTCAATGAGAAG 2004759 Query 33591 ACTATACATTTCCGAATGAATGTTTTCAAT 33620 || ||||||||||| || || || || || Sbjct 2004760 GCTGTACATTTCCGAGTGGATATTCTCCAT 2004789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622945043045320