Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000835495.1_202015-02- 23] 277 sequences; 43,029,152 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq2 239 6e-58 seq1 109 7e-19 >seq2 Length=7068955 Score = 239 bits (264), Expect = 6e-58 Identities = 752/1145 (66%), Gaps = 24/1145 (2%) Strand=Plus/Plus Query 62753 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 62812 || |||||||| || || || ||||||| | | ||| |||| | |||||||||||| Sbjct 2067207 GAGGCCAGATTGCACACAGCGACCTCATCGGGAGCCGTGTATTCGACAATCTCAGTGCAA 2067266 Query 62813 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 62872 ||||| | |||||| || || || | || || |||||| | || || || ||| Sbjct 2067267 AGATTGGAGCTTCGGATGGTCCCCAAGTTCTTCTGGTTGCTCTTTCTATTGCAGGCGTCC 2067326 Query 62873 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 62932 || || || || | || || |||||||| |||| | || | || || | ||| | | Sbjct 2067327 TTGTAGAGCATATAGGGCGTCCCAGTTTCGGTCTGTGCCTCGAGGATAGCATACCATA-G 2067385 Query 62933 ACTC-GAGCCTTTATTATAGATTTGT-ATCTCTTTTCTCTTTCGTATAGT----GTATAC 62986 || ||||||||| || | | | | | ||| ||| ||| ||||| Sbjct 2067386 TTTCTGAGCCTTTAC---AGTCTGGCGACCACGGCCCTCCTTCTCATATCTCTCGTATAG 2067442 Query 62987 AATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATC 63046 | |||| ||||||||| || | || | | | || ||||| |||| ||||| | Sbjct 2067443 AG-CGTT-GAACTCGTCACCATAGACGTCGGCAAGGCCAGGTGCCTCATGAGGACAGAAG 2067500 Query 63047 AACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC- 63105 | | ||| ||| || | || || |||| ||| || | |||||| |||| | || Sbjct 2067501 AGAGTCCATTCTTGGTTCTTCTCGACACGTTCCATGAACAAGTCAGGAGTCCACATGGCG 2067560 Query 63106 TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 63165 || || || || | | |||| || || || || |||||| | || | | || Sbjct 2067561 TAGAACAAG-TCGCGTGCTCTAACCTCTTCCTTGCCGTGGTTCTTTCTCAGGTTCAAAAA 2067619 Query 63166 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTT 63225 | | | || | ||||| || || | ||| ||||| | | | || || || || || Sbjct 2067620 GTCGAACACGTCTGCGTGCCATGGCTCGAGGTAGATGGCAAAAGCACCTGGGCGCTTATT 2067679 Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 || |||||||| | ||| | ||| || ||||| | || | | ||| || |||| || Sbjct 2067680 GCCACCCTGATCGACGTAGCGAGCAGTATTATTGAAGACGCGAAGCATGGGGATAAGCCC 2067739 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATT 63343 ||||| || |||||||| |||| || ||| ||| |||||||||| | | ||| Sbjct 2067740 GTTGGAGGTGCCATTGGTGCCTGCAATGTAGGATCCTGTGGCACGAATGCAATGGGCATT 2067799 Query 63344 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAG 63403 || |||| || || || || | || ||||| | || || || | || ||||| Sbjct 2067800 GA--GACCAATACCTCCAGCTGTCTTGGAGATCATGGCACAAGTCTTGAGGGTGTCATAT 2067857 Query 63404 ATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 63463 || ||||| || || || || |||||| || | |||||| |||| ||| | || Sbjct 2067858 ATTCCCTCGATGCTGTCTTCTTTCATGTCAATCAAGAAACAGGAGGACAGTTGAGGTTGA 2067917 Query 63464 CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGA 63523 ||||| || || || | ||| || |||||||| ||||| || || | || | ||| Sbjct 2067918 GGGGTTCCGGCGTTGAAAAGGGTGGGCGAAGCGTGGGTAAAGCACTTCTGGGACATGAGA 2067977 Query 63524 TTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCAT 63582 ||||||||||| || || || ||||| | || ||||| || ||||| |||||||| Sbjct 2067978 TTGTACGTCTCGATGGCCTTTTCAATATCGTCGCTG-TGAATACCCACTGCCACACGCAT 2068036 Query 63583 TAACATGTGCTGAGGTCTTTCAACGATCTTG-TTGTTTATTTTCAACAAGTAGGATTTTT 63641 | |||||| || || | |||| | | |||| ||| || || | || ||| ||| | | Sbjct 2068037 AAGCATGTGTTGGGGCCGTTCAGC-AACTTGATTGCCAATCTTGAGCAGGTATGATCTCT 2068095 Query 63642 CCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGT 63701 ||| || || ||||||||||| | ||| |||||||| ||||| | ||| | |||| Sbjct 2068096 CCAGCGTCTTGAAACCAAAATATTGGTAGTTGAAGTCTCGGTCGTAGACAATTGCAGAGT 2068155 Query 63702 TGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACTT-GAAATAATAGGAAAA 63760 ||| | ||| | | | | || |||| | | | | ||| || || || || | Sbjct 2068156 TGAACTCATCAGCGTGTCTCATGAC-ACATTCGTAGGTCTCCTTGGAGATCATCGGGGAG 2068214 Query 63761 TGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGt 63820 ||||| |||||| ||||||||||||| | | | ||| | ||| |||| | Sbjct 2068215 GGTTTCTGATTTTTCGGATTGACATAGTGGTAGAGGTCCGAGACCACGGAGGAAAATTGC 2068274 Query 63821 ttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCC 63880 || || || | |||||| || ||||| || || || | || || || | ||||| || Sbjct 2068275 TTCTTGGTCTGTTTGTGGAGGTTTGAAACAGCGATACGTGCTGCGAGGACTGCATAGTCG 2068334 Query 63881 GGATG 63885 ||||| Sbjct 2068335 GGATG 2068339 >seq1 Length=8230860 Score = 109 bits (120), Expect = 7e-19 Identities = 205/299 (69%), Gaps = 3/299 (1%) Strand=Plus/Plus Query 32682 CCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTT 32741 |||||||| | | || | |||||||| || ||||| |||||||| || || | Sbjct 2004491 CCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATCAGTCCTTTGCTC 2004550 Query 32742 TTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAG 32801 || ||||| || ||||| ||||| |||||||| ||||| || ||||| || || || || Sbjct 2004551 TTCAGCCAGAAGATGGATGCAAAGGATCCAGAGAAGAAGATGCCTTCGACGGCTGCGAAA 2004610 Query 32802 GCAATAAGTCTCTCTCCATAAC-CGGCGCT--GTCATGTATCCACTTTTGAGCCCAATCG 32858 || | |||| | || | | || | || ||| |||||| ||||||| || Sbjct 2004611 GCCACTAGTCGTTGGGCAAAGCTCGACTCTTTGTCTGATATCCATCGCAGAGCCCAGTCT 2004670 Query 32859 GCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTA 32918 || ||||| | ||||| ||||| || || || | || ||||| | || || || Sbjct 2004671 GCTTTCTTGCGAATGCAAGGGATTGTGTCGATGGCGTCGAACAGATATGTCTTCTCTTTG 2004730 Query 32919 CTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAAT 32977 || || ||||| || ||||| | ||| || ||||||||||| || || || || || Sbjct 2004731 GGGTCCTTTACATAGGTGTCAATGAGAAGGCTGTACATTTCCGAGTGGATATTCTCCAT 2004789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633629806049200