Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000835495.1_202015-02- 23] 277 sequences; 43,029,152 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1 107 2e-18 >seq1 Length=8230860 Score = 107 bits (118), Expect = 2e-18 Identities = 324/492 (66%), Gaps = 14/492 (3%) Strand=Plus/Plus Query 92927 TCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTACA 92986 ||||| ||||| || ||||||||| |||| | | | ||||| || || || || Sbjct 2004305 TCAGCAACAAACTCAATGTACTGACACATGAGCTTCGAGTTCATGCCGAGCAGTGCGACG 2004364 Query 92987 GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTATT 93046 || || || ||||| | ||| || || ||||| |||||||| | | || | | Sbjct 2004365 GGGAGGGCATCGGTGAGGAATTCCTTTTCGATCCTGACGGCTTCGGTTATAATGTTT--- 2004421 Query 93047 ACTCTACTATTTGGTGGTTT---TTGTACGACATAA-TTGTA-CATTAAGCACGCAAAGT 93101 || | | ||| ||| |||| | || | ||| | || | ||||||||||| Sbjct 2004422 --TCGATGAGTTGTGGGTCCGGCTTGTGCTGCAGATGTTGCATCAAAAGGCACGCAAAGT 2004479 Query 93102 CGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACA 93161 | || || | || ||||| || || || | ||| ||| ||| || | || || | || Sbjct 2004480 CCGTGTGCATGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATCA 2004539 Query 93162 GTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCA 93221 ||||| |||| ||||| || || || ||||| ||||| || || || ||||| | Sbjct 2004540 GTCCTTTGCTCTTCAGCCAGAAGATGGATGCAAAGGATCCAGAGAAGAAGATGCCTTCGA 2004599 Query 93222 CGGCTGCAAATGCCACAATACGTTCGGCAAAATTTG-CGGAATTACTGCTGATCCATTTT 93280 ||||||| || ||||| | |||| |||||| | | | | ||| | |||||| Sbjct 2004600 CGGCTGCGAAAGCCACTAGTCGTTGGGCAAAGCTCGACTCTTTGTCTGAT-ATCCATCGC 2004658 Query 93281 AAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTA- 93339 | |||||| || ||||| || ||| ||||| | ||| ||||| |||| || || || Sbjct 2004659 AGAGCCCAGTCTGCTTTCTTGCGAATGCAAGGGATTGTGTCGATGGCGTCGAACAGATAT 2004718 Query 93340 ATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATG 93399 ||| ||| | | || || || || || || | || |||||||| || || Sbjct 2004719 GTCT-TCTCTTTGGGGTCCTTTACATAGGTGTCAATGAGAAGGCTGTACATTTCCGAGTG 2004777 Query 93400 GACATTCTCCAT 93411 || ||||||||| Sbjct 2004778 GATATTCTCCAT 2004789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556858871869480