Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000835495.1_202015-02- 23] 277 sequences; 43,029,152 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq7 152 1e-31 seq5 107 5e-18 seq6 93.3 1e-13 >seq7 Length=4110827 Score = 152 bits (168), Expect = 1e-31 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || |||||||| | || |||||||| | ||| ||| || ||||| || ||||| | | Sbjct 1063125 CCGCCGCGGAGCCGGAGCACGAGATGGAGCGTCGATTCCTTCTGGATGTTGTAGTCCGAG 1063184 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| ||||| || | || || || || |||||||| ||||| || ||| Sbjct 1063185 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGCGGG 1063244 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || ||||| || |||||||| || ||| || ||||| || || | ||||||||||| || Sbjct 1063245 ATCCCTTCCTTGTCCTGGATCTT-GCTCTTGACGTTGTCGATCGTGTCGCTCGATTCAAC 1063303 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || |||||||||||||| || || || ||||| ||||| || ||||| Sbjct 1063304 CTCCAGCGTGATCGTCTTGCCAGTAAGTGTCTTTACGAAGATTTGCAT 1063351 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| || ||||| |||||||| | ||| || || |||||| Sbjct 1063389 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCTTCGAGTTGCTTGCCGGCGAAG 1063448 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| ||||| || ||||| || || || |||||||| || | ||| || || Sbjct 1063449 ATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGATTTGACATTG 1063508 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||||| || || || || |||||||| ||||| || || || ||||| ||| Sbjct 1063509 TCGATCGTGTCGCTGGACTCGACCTCAAGCGTGATGGTCTTGCCAGTAAGTGTCTTCACG 1063568 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 1063569 AAGATTTGCAT 1063579 >seq5 Length=4609732 Score = 107 bits (118), Expect = 5e-18 Identities = 166/233 (71%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || |||||||| | | |||||||| | ||| ||| || ||||| || |||| Sbjct 1364972 CATG-CCGCCGCGGAGGCGGGGCACGAGATGGAGCGTCGATTCCTTCTGGATGTTGTAGT 1365030 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| ||||| ||||| || | || || || || |||||||| ||||| || Sbjct 1365031 CGGACCTGGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGG 1365090 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGAT 288420 || ||| ||||| || |||| || || ||| || | ||| | || | |||||||| Sbjct 1365091 ATGTGATCCCTTCCTTGTCCTAAATCTT-GCTCTTGATGTTGTTGATTGTGTCGCTCGAC 1365149 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || |||||||||||||| | || || ||||| | ||| |||||||| Sbjct 1365150 TCAACCTCCAGCGTGATCGTCTTGACAGTAAGTGTCTTCATGAAAATCTGCAT 1365202 >seq6 Length=4175021 Score = 93.3 bits (102), Expect = 1e-13 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || |||||| || || || || ||||| | ||| || || ||||||||| Sbjct 1383148 TTCTGGATGTTGTAGTCGCTCAGAGTTCGGCCATCTTCAAGTTGCTTGCCGGCGAAGATC 1383089 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 | ||||| || ||||| ||||| || || ||||| || | || ||||| || Sbjct 1383088 AATCGCTGCTGGTCGGGCGGGATGCCTTCCTTGTCTTGGATCTTGGACTTGACGTTGTCG 1383029 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464 || | ||| ||| || || || || ||||| ||||| || || || ||||||||||| Sbjct 1383028 ATCGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 1382970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179650213332806