Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000835495.1_202015-02- 23] 277 sequences; 43,029,152 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq6 100 6e-16 >seq6 Length=4175021 Score = 100 bits (110), Expect = 6e-16 Identities = 358/552 (65%), Gaps = 6/552 (1%) Strand=Plus/Plus Query 297169 ACCTTTGAATCCTCGATACCACGGTTTCATTT-CGACGAGATCTTCTCCAGCAATCAATC 297227 |||||||||||| || |||| || | ||| | | || ||||| || || || | Sbjct 476597 ACCTTTGAATCCGCGGAACCAGGGCTGCATAGGCTTCCAG-TCTTCGCCGGCCATTCTGC 476655 Query 297228 GCTTCACGTTGTCTACGATGTCTTTTGGATTGTAACTAGGGATATTAGTCGACCAACCGG 297287 | || | |||||| |||||||||| ||||||||| | |||||| || ||| || | Sbjct 476656 GTTTGAGGTTGTCCACGATGTCTTCTGGATTGTAGTTGGGGATAGAAGAACTCCAGCCCG 476715 Query 297288 TACCGATTCCACTCGAACCATTCACCAGAATGCTCGGAATAACAGGCACATAATACTCTG 297347 | || || || | |||||| || || | | || | | || || || ||| | Sbjct 476716 TGCCAATACCGTCAGCACCATTGACGAGGACCATTGGGACGATCGGTACGTATACCTCGG 476775 Query 297348 GTTCGATCTTGTCACCGTCATCATACAGATATTTCAGAAGATTATCGTCCGTATCGACGA 297407 | |||||||| | | |||||||| ||| |||||| || || | | | | Sbjct 476776 GCTCGATCTTCTTGTCATCATCATAGTTATAGGACAGAAGGGGTTCATCGGCTTGGTGAA 476835 Query 297408 AAACCTGTCGAGTCTGAGGGTTC-AGTTTTGTGAAAATATATCGTGCACTCGCGTGATCC 297466 | | || | | | |||| || |||||||| ||||| || || || ||| Sbjct 476836 ACAGCTTCCTTG-CGAAGGGCGATAGACGGGTGAAAATGTATCGAGCGCTTGCAGAATCG 476894 Query 297467 TTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAGTTGATGTTATTG 297526 | || ||||| || | ||| || ||||| ||| |||| |||||| || || Sbjct 476895 CTGCCGCCCTGGTTTCGGGTACCAAATTGGCCTGAGGGCTCCAACAAGTTGACATTGTTC 476954 Query 297527 CTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGCTTCGCCATGG 297586 ||||||| | || || ||| || || ||| || ||||||| ||| |||||| Sbjct 476955 GATCCGACAAAGCTTTGGGCCAGGCCGACAATCGTCTGCTGGAGAGATGTTTCACCATGG 477014 Query 297587 TGATAGGCGCT-ATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTTCACGTCGGTCGT 297645 ||||| ||| | || | | | || |||| | || |||||||||| || | | Sbjct 477015 TGATACGCGGTCATAC-CACCGACCAAACCCGCCAGCTCAGCAACCTTCATATCCTTTTT 477073 Query 297646 CAAATTGCGCTTGAAAGCTGAATATATCACTTTCCGTTGAGAAGGTTTGAAACCATCAAC 297705 || |||||||||||| || ||| || ||||| || ||| ||| || | ||||||||| Sbjct 477074 CAGATTGCGCTTGAAGCATGCATACATGACTTTTCGCTGACCAGGCTTTAGACCATCAAC 477133 Query 297706 GACCGACGGAAT 297717 || || || || Sbjct 477134 TACTGAGGGGAT 477145 Score = 91.5 bits (100), Expect = 3e-13 Identities = 143/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 332810 AATGATCACGACACCTCCACCAAAGTTCTTAAGTGCTTCGGCCATTGCTCCGAGACTCTC 332869 |||||| |||||||| || | || | ||| || || | || | || || | || Sbjct 2290580 AATGATGACGACACCACCCTCGAACTCCTTCAGAGCCTTGGAAAGAGCACCCAACGAATC 2290639 Query 332870 ACGGTCAACGAAGTTGGTCGGTTCGTCCAAAACGATCACGTGGGGTTGTTGCCATAGAGC 332929 |||||||| | ||||||| ||||||||||||||||||| || || ||||||| | || Sbjct 2290640 ACGGTCAAGGTAGTTGGTGGGTTCGTCCAAAACGATCAAATGAGGGCGTTGCCA-CGTGC 2290698 Query 332930 -AGCGCCGATAACCAATTTCAGCTTTTGCCCGCCAGATAGACCACGAATGCGAGAATGAG 332988 |||| | | ||| | || | || || ||||| |||||||| ||||| || || | Sbjct 2290699 AAGCGGCAAGAACGACCTTGACACGCTGACCACCAGACAGACCACGCATGCGGGAGTGGG 2290758 Query 332989 TTGTAAATTCAGGGTCGAGACC 333010 | ||||||| |||||||| Sbjct 2290759 AGATCAATTCAGCATCGAGACC 2290780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102876085809950