Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000835495.1_202015-02- 23] 277 sequences; 43,029,152 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq7 123 2e-23 seq2 111 2e-19 seq5 89.7 5e-13 seq4 86.0 6e-12 >seq7 Length=4110827 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||||||||| | | ||||| ||||| | ||||||||| || || |||||||| || | Sbjct 1063124 ACCGCCGCGGAGCCGGAGCACGAGATGGAGCGTCGATTCCTTCTGGATGTTGTAGTCCGA 1063183 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||||| |||| || ||||||||||| ||| | || || |||||||||||||| || Sbjct 1063184 GAGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGCGG 1063243 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || ||||| || || || || || ||| || || | || || | | || || Sbjct 1063244 GATCCCTTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATCGTGTCGCTCGATTCAAC 1063303 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||||| || | || |||||||| |||||||| Sbjct 1063304 CTCCAGCGTGATCGTCTTGCCAGTAAGTGTCTTTACGAAGATTTGCAT 1063351 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 ||||| |||| ||| ||||| | || | ||| || || || |||||||| || | Sbjct 1062897 CCGCCACGCAGTCTCAGCACCAAGTGCAACGTGCTCTCCTTCTGGATGTTGTAGTCGCTG 1062956 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || ||| |||| || | ||||||||| || |||| |||||||||||||| |||||| Sbjct 1062957 AGAGTCCGCCCGTCCTCCAACTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGAGGA 1063016 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| || || | || || | ||||| Sbjct 1063017 ATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATCGTGTCTGAGCTCTCCACC 1063076 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||||| || | || |||||||| |||||||| Sbjct 1063077 TCCAGCGTAATCGTCTTGCCAGTAAGTGTCTTTACGAAGATTTGCAT 1063123 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || || |||||||| || | | |||||| ||||||| || ||||||||| Sbjct 1063383 GTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCTTCGAGTTGCTTGCCG 1063442 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || || ||||||||||| || || || || || || || || || || || Sbjct 1063443 GCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGATTTG 1063502 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || || | || || || || | || | ||||||||| || | || Sbjct 1063503 ACATTGTCGATCGTGTCGCTGGACTCGACCTCAAGCGTGATGGTCTTGCCAGTAAGTGTC 1063562 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| |||||||| Sbjct 1063563 TTCACGAAGATTTGCAT 1063579 >seq2 Length=7068955 Score = 111 bits (122), Expect = 2e-19 Identities = 351/532 (66%), Gaps = 19/532 (4%) Strand=Plus/Plus Query 154905 ACGCGTTTCATAAACAAATCCGGCACCCACAAAGCGTACAACAAATCACGCGCCTTTTTG 154964 || |||| ||| ||||| || || ||||| ||||| ||||| || || || | Sbjct 2067525 ACACGTTCCATGAACAAGTCAGGAGTCCACATGGCGTAGAACAAGTCGCGTGCTCTAACC 2067584 Query 154965 TCTTCAGCGCCCATGTTTCGCTTTAAA-TTCAAAAAATCATATATGTCGGCGTGCCACGG 155023 ||||| ||| || ||| | | | |||||||| || | | ||| |||||||| || Sbjct 2067585 TCTTCCTTGCCG-TGGTTCTTTCTCAGGTTCAAAAAGTCGAACACGTCTGCGTGCCATGG 2067643 Query 155024 CTCTAAATATACGGCCATCGCGCCTTTGCGTTTT---CCTCCTTGATCCACGTGACGCAC 155080 ||| | || | ||| | || ||| ||| || || || ||||| |||| || | Sbjct 2067644 CTCGAGGTAGATGGCAAAAGCACCTGGGCGCTTATTGCCACCCTGATCGACGTAGCGAGC 2067703 Query 155081 ACAATTATTGTACACGCGCAACAATGGTTCCACGCCGCTGGCCGTGCCGTTGGTGCC--- 155137 | ||||||| | ||||| | || || | ||| ||| ||||| |||||||| Sbjct 2067704 AGTATTATTGAAGACGCGAAGCATGGGGATAAGCCCGTTGGAGGTGCCATTGGTGCCTGC 2067763 Query 155138 -ACGTATCGCGCTGCCGCGAGCACGCGCTTTATGAACATTAACGCCCAAACCTCC-GCCG 155195 | ||| ||| || | | || ||| |||| | || | |||||| || | Sbjct 2067764 AATGTAGGATCCTGTGGCACGAATGCA----ATGGGCATTGAGACCAATACCTCCAGCTG 2067819 Query 155196 TATTT-AGATATTTGCGCACAGTCCGCCAAAGTTTCGTACATTCCTTTGATGCTGTCTTC 155254 | || |||| | || || |||| | || || || ||||| | |||||||||||| Sbjct 2067820 TCTTGGAGATCATGGCACA-AGTCTTG-AGGGTGTCATATATTCCCTCGATGCTGTCTTC 2067877 Query 155255 TTTCAACGTCAA-CAAGAAACACGAAGATAATTGAGGTTGAGGGCAGCCGGCCGCAAATA 155313 |||| | ||||| ||||||||| || || | ||||||||||||| ||||| || | Sbjct 2067878 TTTC-ATGTCAATCAAGAAACAGGAGGACAGTTGAGGTTGAGGGGTTCCGGCGTTGAAAA 2067936 Query 155314 ATGTAGGACTAGCGTGTGTAAACATTTTGTTGGCGGTTAAGTTGTAAGTTTCGATGGCGG 155373 || || |||||| ||||| || | || | | ||||| || |||||||| Sbjct 2067937 GGGTGGGCGAAGCGTGGGTAAAGCACTTCTGGGACATGAGATTGTACGTCTCGATGGCCT 2067996 Query 155374 CGTCAATGTCACGACCGTGTATACCGATCGCCACGCGCATCAGCATGTGTTG 155425 ||||| || | ||| ||||| | ||||| ||||| ||||||||||| Sbjct 2067997 TTTCAATATCGTCGCTGTGAATACCCACTGCCACACGCATAAGCATGTGTTG 2068048 >seq5 Length=4609732 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 |||||||| | | |||| ||||| | ||||||||| || || |||||||| || | Sbjct 1364976 CCGCCGCGGAGGCGGGGCACGAGATGGAGCGTCGATTCCTTCTGGATGTTGTAGTCGGAC 1365035 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 |||||| |||| || ||||||||||| ||| | || || ||||||||||||| | Sbjct 1365036 CTGGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGATGTG 1365095 Query 64337 ATTCCTTCTTTTTC 64350 || ||||| || || Sbjct 1365096 ATCCCTTCCTTGTC 1365109 >seq4 Length=6030834 Score = 86.0 bits (94), Expect = 6e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 |||||||| || || |||||||| || | || ||||| ||||||| || ||||||||| Sbjct 3720681 GTCGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCTTCGAGTTGCTTGCCG 3720622 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | || || || |||||||| || ||||| ||||| || ||| Sbjct 3720621 GCGAAGATCAGGCGTTGCTGGTCCGGGGGAATGCCTTCCTTGTCT 3720577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499643069979880