Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000835495.1_202015-02- 23] 277 sequences; 43,029,152 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq7 109 5e-19 seq1 107 2e-18 seq5 87.8 2e-12 >seq7 Length=4110827 Score = 109 bits (120), Expect = 5e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| || | ||| | || | || | | | |||||||| || |||||||||||| Sbjct 1063352 GCCGCCACGGAGACGGAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 1063411 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || ||| |||||||| || |||| |||| || ||||| |||||||| || Sbjct 1063412 CAGGGTGCGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGG 1063471 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| || ||| | |||| || | |||||| | ||||| | Sbjct 1063472 GATGCCCTCCTTGTCCTGGATCTTGGATTTGACATTG-TCGATCGTGTCGCTGGACTCGA 1063530 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGC 138617 |||| | ||| | || || ||||| || || || || || || |||||||| Sbjct 1063531 CCTCAAGCGTGATGGTCTTGCCAGTAAGTGTCTTCACGAAGATTTGCATGGC 1063582 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || |||||||||||||| | ||| ||| |||||| | || || || | | Sbjct 1062932 CTCCTTCTGGATGTTGTAGTCGCTGAGAGTCCGCCCGTCCTCCAACTGCTTGCCCGCGAA 1062991 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542 || || ||||| ||||||||||| || || || ||||| ||| || || | | Sbjct 1062992 AATCAGCCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTT 1063051 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | ||||| | ||||||||| | ||| | ||| || ||||| || || ||||| Sbjct 1063052 GTCGATCGTGTCTGAGCTCTCCACCTCCAGCGTAATCGTCTTGCCAGTAAGTGTCTTTAC 1063111 Query 138603 AAAAATCTGCAT 138614 || || ||||| Sbjct 1063112 GAAGATTTGCAT 1063123 Score = 86.0 bits (94), Expect = 6e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| || ||||||||||| | || || |||||| || || || || | | Sbjct 1063158 GATTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCA 1063217 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| ||||| || || || ||||| ||||| ||| || || | Sbjct 1063218 AAGATCAGGCGCTGCTGGTCGGGCGGGATCCCTTCCTTGTCCTGGATCTTGCTCTTGACG 1063277 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| |||| || ||||| | ||| | ||| || ||||| || || ||| Sbjct 1063278 TTGTCGATCGTGTCGCTCGATTCAACCTCCAGCGTGATCGTCTTGCCAGTAAGTGTCTTT 1063337 Query 138601 ACAAAAATCTGCATG 138615 || || || |||||| Sbjct 1063338 ACGAAGATTTGCATG 1063352 >seq1 Length=8230860 Score = 107 bits (118), Expect = 2e-18 Identities = 219/322 (68%), Gaps = 5/322 (2%) Strand=Plus/Minus Query 52404 GTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTTAC 52463 ||||| ||||| ||||| ||| | || || || || |||||| ||||||| | Sbjct 2004615 GTGGCTTTCGCAGCCGTCGAAGGCATCTTCTTCTCTGGATCCTTTGCATCCATCTTCTGG 2004556 Query 52464 ATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGAC 52523 | || | ||||| | ||||||||||| || ||| ||||||| | || || || ||| Sbjct 2004555 CTGAAGAGCAAAGGACTGATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCTCGTGAC 2004496 Query 52524 GAAGGACTGCACACGGACTTTGCGTGCC-TCTACTACAAGACGCGCGTGACCGAAAAATT 52582 || || ||||||||||||||||||||| | | | ||| | || | | | || Sbjct 2004495 GAGGGCATGCACACGGACTTTGCGTGCCTTTTGATGCAACATCTGC---AGC-ACAAGCC 2004440 Query 52583 GGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTT 52642 ||| | | ||| | ||| | | || || || ||||||||||| || | Sbjct 2004439 GGACCCACAACTCATCGAAAACATTATAACCGAAGCCGTCAGGATCGAAAAGGAATTCCT 2004380 Query 52643 TACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACAT 52702 || | || || || |||| ||||| ||||||||| || || |||||| ||||||| Sbjct 2004379 CACCGATGCCCTCCCCGTCGCACTGCTCGGCATGAACTCGAAGCTCATGTGTCAGTACAT 2004320 Query 52703 CGAGTTTGTGGCGGATCGTCTG 52724 |||||||| || || |||||| Sbjct 2004319 TGAGTTTGTTGCTGACCGTCTG 2004298 >seq5 Length=4609732 Score = 87.8 bits (96), Expect = 2e-12 Identities = 142/198 (72%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| || |||||||||||| | | || || |||||| || || || || | | Sbjct 1365009 GATTCCTTCTGGATGTTGTAGTCGGACCTGGTGCGGCCGTCCTCCAGCTGCTTGCCCGCA 1365068 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGT-ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA 138539 |||| || ||||| |||| |||| || || ||||| ||||| | | | || | || | Sbjct 1365069 AAGATCAGGCGCTGCTGGT-CGGATGTGATCCCTTCCTTGTC-CTAAATCTTGCTCTTGA 1365126 Query 138540 --TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 ||||| | |||||| ||||||| ||||| | ||| | ||| || |||| || || Sbjct 1365127 TGTTGTT-GATTGTGTCGCTCGACTCAACCTCCAGCGTGATCGTCTTGACAGTAAGTGTC 1365185 Query 138598 TTTACAAAAATCTGCATG 138615 || | |||||||||||| Sbjct 1365186 TTCATGAAAATCTGCATG 1365203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496260681691440