Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000835495.1_202015-02-
23] 277 sequences; 43,029,152 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq7 109 5e-19
seq1 107 2e-18
seq5 87.8 2e-12
>seq7
Length=4110827
Score = 109 bits (120), Expect = 5e-19
Identities = 165/232 (71%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
|||||| || | ||| | || | || | | | |||||||| || ||||||||||||
Sbjct 1063352 GCCGCCACGGAGACGGAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 1063411
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
|| || || ||| |||||||| || |||| |||| || ||||| |||||||| ||
Sbjct 1063412 CAGGGTGCGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGG 1063471
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCA 138565
|| || || ||||| ||| || ||| | |||| || | |||||| | ||||| |
Sbjct 1063472 GATGCCCTCCTTGTCCTGGATCTTGGATTTGACATTG-TCGATCGTGTCGCTGGACTCGA 1063530
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGC 138617
|||| | ||| | || || ||||| || || || || || || ||||||||
Sbjct 1063531 CCTCAAGCGTGATGGTCTTGCCAGTAAGTGTCTTCACGAAGATTTGCATGGC 1063582
Score = 89.7 bits (98), Expect = 5e-13
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482
|||||| || |||||||||||||| | ||| ||| |||||| | || || || | |
Sbjct 1062932 CTCCTTCTGGATGTTGTAGTCGCTGAGAGTCCGCCCGTCCTCCAACTGCTTGCCCGCGAA 1062991
Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542
|| || ||||| ||||||||||| || || || ||||| ||| || || | |
Sbjct 1062992 AATCAGCCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTT 1063051
Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602
|| | ||||| | ||||||||| | ||| | ||| || ||||| || || |||||
Sbjct 1063052 GTCGATCGTGTCTGAGCTCTCCACCTCCAGCGTAATCGTCTTGCCAGTAAGTGTCTTTAC 1063111
Query 138603 AAAAATCTGCAT 138614
|| || |||||
Sbjct 1063112 GAAGATTTGCAT 1063123
Score = 86.0 bits (94), Expect = 6e-12
Identities = 136/195 (70%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|| ||||| || ||||||||||| | || || |||||| || || || || | |
Sbjct 1063158 GATTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCA 1063217
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| || ||||| ||||| || || || ||||| ||||| ||| || || |
Sbjct 1063218 AAGATCAGGCGCTGCTGGTCGGGCGGGATCCCTTCCTTGTCCTGGATCTTGCTCTTGACG 1063277
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| || | |||||| |||| || ||||| | ||| | ||| || ||||| || || |||
Sbjct 1063278 TTGTCGATCGTGTCGCTCGATTCAACCTCCAGCGTGATCGTCTTGCCAGTAAGTGTCTTT 1063337
Query 138601 ACAAAAATCTGCATG 138615
|| || || ||||||
Sbjct 1063338 ACGAAGATTTGCATG 1063352
>seq1
Length=8230860
Score = 107 bits (118), Expect = 2e-18
Identities = 219/322 (68%), Gaps = 5/322 (2%)
Strand=Plus/Minus
Query 52404 GTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTTAC 52463
||||| ||||| ||||| ||| | || || || || |||||| ||||||| |
Sbjct 2004615 GTGGCTTTCGCAGCCGTCGAAGGCATCTTCTTCTCTGGATCCTTTGCATCCATCTTCTGG 2004556
Query 52464 ATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGAC 52523
| || | ||||| | ||||||||||| || ||| ||||||| | || || || |||
Sbjct 2004555 CTGAAGAGCAAAGGACTGATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCTCGTGAC 2004496
Query 52524 GAAGGACTGCACACGGACTTTGCGTGCC-TCTACTACAAGACGCGCGTGACCGAAAAATT 52582
|| || ||||||||||||||||||||| | | | ||| | || | | | ||
Sbjct 2004495 GAGGGCATGCACACGGACTTTGCGTGCCTTTTGATGCAACATCTGC---AGC-ACAAGCC 2004440
Query 52583 GGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTT 52642
||| | | ||| | ||| | | || || || ||||||||||| || |
Sbjct 2004439 GGACCCACAACTCATCGAAAACATTATAACCGAAGCCGTCAGGATCGAAAAGGAATTCCT 2004380
Query 52643 TACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACAT 52702
|| | || || || |||| ||||| ||||||||| || || |||||| |||||||
Sbjct 2004379 CACCGATGCCCTCCCCGTCGCACTGCTCGGCATGAACTCGAAGCTCATGTGTCAGTACAT 2004320
Query 52703 CGAGTTTGTGGCGGATCGTCTG 52724
|||||||| || || ||||||
Sbjct 2004319 TGAGTTTGTTGCTGACCGTCTG 2004298
>seq5
Length=4609732
Score = 87.8 bits (96), Expect = 2e-12
Identities = 142/198 (72%), Gaps = 6/198 (3%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|| ||||| || |||||||||||| | | || || |||||| || || || || | |
Sbjct 1365009 GATTCCTTCTGGATGTTGTAGTCGGACCTGGTGCGGCCGTCCTCCAGCTGCTTGCCCGCA 1365068
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGT-ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA 138539
|||| || ||||| |||| |||| || || ||||| ||||| | | | || | || |
Sbjct 1365069 AAGATCAGGCGCTGCTGGT-CGGATGTGATCCCTTCCTTGTC-CTAAATCTTGCTCTTGA 1365126
Query 138540 --TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597
||||| | |||||| ||||||| ||||| | ||| | ||| || |||| || ||
Sbjct 1365127 TGTTGTT-GATTGTGTCGCTCGACTCAACCTCCAGCGTGATCGTCTTGACAGTAAGTGTC 1365185
Query 138598 TTTACAAAAATCTGCATG 138615
|| | ||||||||||||
Sbjct 1365186 TTCATGAAAATCTGCATG 1365203
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496260681691440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |