Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000835495.1_202015-02- 23] 277 sequences; 43,029,152 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq2 149 6e-31 seq1 129 6e-25 seq7 107 2e-18 seq6 87.8 2e-12 >seq2 Length=7068955 Score = 149 bits (164), Expect = 6e-31 Identities = 1189/1886 (63%), Gaps = 78/1886 (4%) Strand=Plus/Plus Query 145719 GTCGACGGTGAACTGCGTCGCTTGAGCGGCCGGTTTTGTGCGCAGATAGTACATGCCGGT 145778 |||||| ||||| || | | ||| | ||||| | |||||||| |||||||||||||| Sbjct 2066288 GTCGACAGTGAATTGAATAGGTTGTGTGGCCGCCATCGTGCGCAGGTAGTACATGCCGGT 2066347 Query 145779 CTTGAGCTGTTTCTGCCA-CGTGTAAAAGTGTATGCTCGACAT---GACCGAGTACGTGG 145834 |||||| | | ||| | || ||| ||| ||||||| || | || | || | Sbjct 2066348 CTTGAGACCCATTTTCCAGCCTGCAAA-GTGCATGCTCGTGATCTTGCCCATG---GTTG 2066403 Query 145835 GTTCGGCGACAAACAAATTT--AGAGATTGGCTCTGATCAATGAAAGGAGCCCGGTCGGC 145892 |||| | ||| ||| | ||||| ||| ||| |||||||| | | | ||||| || Sbjct 2066404 GTTC--CTTCAAGTGAATGTTGAGAGACTGGGACTGGTCAATGAAGGCACCACGGTCCGC 2066461 Query 145893 GGCCATGTCTATCATGCACTTTGATTTAATTTCCCATGCGGTTTTAAAGAGATCCTTGAC 145952 ||||| | | | | | | ||||||||| |||| || | ||| | |||| Sbjct 2066462 TGCCATTTGCAGGACGGTCCGCTGGCTGATTTCCCATACGGTCTTGTATAGAGCTTTGAT 2066521 Query 145953 GTGCTGGGGTATTTCGTCAATGTTCTGCACAGACCCATTTTCGGCCAATATTTTGTTGCG 146012 || | || | | | ||||| || | || || |||||| | || || Sbjct 2066522 GTCCGCAGGAACGTTGGGGATGTTTTGGATCGAGCCGCCTTCGGCGATGATCCGATTCTT 2066581 Query 146013 CA-ATTCTGGAGTGTAAATGTTCAAGTCTACGAGGGCCTTGATGAGATACTGGTTGACCA 146071 || ||| | | | | | | |||||| ||||| |||| | || | | ||||| | Sbjct 2066582 CATATTGTCG-GACCATAGGCCCAAGTCGACGAGATCCTTCAGCAGCCAGGGATTGACAA 2066640 Query 146072 CCTGAAACTCGCCGGCGAGAACGCGCCTCAGA-TACACGTTGCTGGTGAACGGCTCGAAC 146130 |||| ||||| ||||| || || || | ||| || | || ||| |||| ||||| Sbjct 2066641 CCTGGAACTCACCGGCAAGGACACGGCG-AGAGTAGATATTAGATGTGTACGGTTCGAAG 2066699 Query 146131 GACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAA 146190 | |||||||| ||||| || || | |||| || || |||||| || || || | | Sbjct 2066700 CATTCGTTGTTGCCGAGGATTTGAGAAGTCGAGGCAGTGGGCATGGGAGCAACAAGGAGA 2066759 Query 146191 GAGTTTCTCACGCCGTGTCTTTGAATCT----TTTCCCGTAGTTTGGACCAATTCCACAA 146246 ||||| | | || ||| | ||||| |||| | || ||||| |||||| Sbjct 2066760 GAGTTGCGAATACCATGTTTGGCAATCTCGGCTTTCAAGGCGTC----CCAATCCCACAA 2066815 Query 146247 ATGATCCGTGGGATAGATATTGTAGTTGTCGTAATGCATAGTGCCGCGGAACAGGGGGCT 146306 | | | |||| || ||| | ||||||| || | | |||| | ||| ||||| Sbjct 2066816 GT---CTGAGGGAGTGACATTCCACATGTCGTATTGAAGAATGCCTTGCGACACTGGGCT 2066872 Query 146307 ATTCTCGTACGATTCATAAGGACCGTCGATCTTGGCCAGTTCGCAGCTAGCTTCCAGAGC 146366 ||||| | |||||| | || | ||| |||||||| || ||| ||||| Sbjct 2066873 GCCTTCGTATGTTTCATATGTTCCCTGCTCCTTTGCCAGTTCACAAGAAGCAGTGAGAGC 2066932 Query 146367 CGAAAAGTATATGGTCTCCGCGATCATGTAGTTGACGCTCCTGGCCTCCTCGCTGTCGTA 146426 | | ||| |||||||| ||| | || | ||||||||| |||| | Sbjct 2066933 AGCATGGTAGATGGTCTCGAAGATTTGGATATTCAATTGCCTGGCCTCGGGAGAGTCGAA 2066992 Query 146427 GGGGATATCGAGAAGCACAA---AGGCGTCGGCGAGACCCTGTATCCCGACACCAACGGG 146483 || | | | ||| ||| |||||||||||||||| || | |||| ||| ||||| Sbjct 2066993 AGGAAGAC---GCAGCGCAAGGAAGGCGTCGGCGAGACCTTGAACTCCGAGACCGACGGG 2067049 Query 146484 GCGGTGTTTCTTGTTACTGTTCGCAGCGCCCGCAGTGGGATAGTGGTTGCTGTCGATGAT 146543 |||||| ||| || ||| || | | || |||| |||| | ||||| || Sbjct 2067050 TCGGTGTCGGAAGTTGCTCTTCTTCGCTTCAGGGACAGGGTAGTAGTTGATATCGATAAT 2067109 Query 146544 CTTGTTGAGATTACGCACGACAATTTTCGTCAAACGATTCAGCAGGACATAGTCAAATGT 146603 |||||| || || || |||| | || | || || | | ||||| || Sbjct 2067110 CTTGTTTAGGTTGCGAGTCACAACCTGAGTGACCTCATGAAGACGACCGAAGTCATATTC 2067169 Query 146604 ---TTTAGTTTTAACGTTGACGCACTTGTTGACGGCGATAGAGGCCAAGTTACATACGGC 146660 | || || || |||| | | || || | ||||||| || || || || Sbjct 2067170 ACCTCGAGCTTG---GTCGACGAATGTCGGGAGAGCCAGGGAGGCCAGATTGCACACAGC 2067226 Query 146661 AGTCTCGTCCTTGTCGCAATACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGAT 146720 ||| || | || | |||||||| | ||| || ||| || |||| | Sbjct 2067227 GACCTCATCGGGAGCCGTGTATTCGACAATCTCAGTGCAAAGATTGGAGCTTCGGATGGT 2067286 Query 146721 GCCCAAAtttttttGGTTACTAAACTTGTTGCAGGGGTCCTTGTAGAGCATGTACGGTCC 146780 ||||| || || ||||| || | ||||||| ||||||||||||||| || || Sbjct 2067287 CCCCAAGTTCTTCTGGTTGCTCTTTCTATTGCAGGCGTCCTTGTAGAGCATATAGGGCGT 2067346 Query 146781 CCCGGTTTCGACATTGGTCTCGACGATGAATCTAAACAAA-TCTCTG-GCCTTTACTTGT 146838 ||| |||||| | | ||||| ||| | | | || | | |||| |||||||| || Sbjct 2067347 CCCAGTTTCGGTCTGTGCCTCGAGGAT--AGCATACCATAGTTTCTGAGCCTTTACA-GT 2067403 Query 146839 CTTTCGTACA-GTTTATTCTTTTCGTATTTCTCGTACA-ATATTTCAAAACTAGA-ACCG 146895 || || || | | ||| || ||| ||||||| | | || || || | ||| Sbjct 2067404 CTGGCGACCACGGCCCTCCTTCTCATATCTCTCGTATAGAGCGTTGAA--CTCGTCACCA 2067461 Query 146896 TACTCGTCGAGGAGGCCGGGATACTTTTTGGGACAGAACAGCGACCATTCTTTATTCTCC 146955 || ||||| ||||| || || | |||||||| || | |||||||| |||| | Sbjct 2067462 TAGACGTCGGCAAGGCCAGGTGCCTCATGAGGACAGAAGAGAGTCCATTCTTGGTTCTTC 2067521 Query 146956 TTCACGCGTTCCATAAACAAATCGGGAATCCAAA-GGCCCAGCATCAAGTCGCGAGCCTT 147014 | || |||||||| ||||| || ||| |||| | ||| || | ||||||||| || | Sbjct 2067522 TCGACACGTTCCATGAACAAGTCAGGAGTCCACATGGCGTAGAA-CAAGTCGCGTGCTCT 2067580 Query 147015 GGCGTCCTCGGAGCCCATGTTGCGTCTCAAGTTGAGGACATCGTAAATTTCCGGATGCCA 147074 | || || ||| ||| ||||| ||| | | ||| | | || | ||||| Sbjct 2067581 AACCTCTTCCTTGCCGTGGTTCTTTCTCAGGTTCAAAAAGTCGAACACGTCTGCGTGCCA 2067640 Query 147075 AGGCTCCACGTATGCGGCGAGTGCGCCTTTTCGCTTA---CCGCCCTGATCGACGTGGCG 147131 ||||| | ||| ||| | || ||| |||||| || ||||||||||||| ||| Sbjct 2067641 TGGCTCGAGGTAGATGGCAAAAGCACCTGGGCGCTTATTGCCACCCTGATCGACGTAGCG 2067700 Query 147132 CACCATGTTATTGAAGACTCGTAACATGGACACGAGGCCGCCGGATTT---TGTGGTGCC 147188 | | ||||||||||| || | ||||| | || ||| ||| | ||||||| Sbjct 2067701 AGCAGTATTATTGAAGACGCGAAGCATGGGGATAAGCCCGTTGGAGGTGCCATTGGTGCC 2067760 Query 147189 ------GTTGTAT--TG-AGCGCTGACGCTTTGCACGCTCAGCCCGAGACCTCCGCCCAG 147239 || | || || || | | || || | | || || | |||||| | Sbjct 2067761 TGCAATGTAGGATCCTGTGGCACGAATGCAATGGGCATTGAGACCAATACCTCCAGCTGT 2067820 Query 147240 ATTCGAAATCAAAGC-GGACTCGTGCAAGGTCTTGTAGATGCCGTCGATGCTGTCTTCCT 147298 || || |||| || | || || | ||| | || || || |||||||||||||| | Sbjct 2067821 CTTGGAGATCATGGCACAAGTCTTG-AGGGTGTCATATATTCCCTCGATGCTGTCTTCTT 2067879 Query 147299 TGATG-CATTGCAGGAAACACGAACACATTTGGGGACGACACGTGCCCGCCGCAAACAGC 147357 | ||| || | || |||||| || ||| ||| || || || || || || || Sbjct 2067880 TCATGTCAAT-CAAGAAACAGGAGGACAGTTGAGGTTGAGGGGTTCCGGCGTTGAAAAGG 2067938 Query 147358 GTGGGGCTGGCGTGCGTGAACGTGCCCAGACTCATCA-ATTGATACGTTTCAATGGCGCT 147416 ||||| ||||| || || | | ||| | |||| ||||| || ||||| | Sbjct 2067939 GTGGGCGAAGCGTGGGTAAAGCACTTCTGGGACATGAGATTG-TACGTCTCGATGGCCTT 2067997 Query 147417 CATAACGTCATCGCCGTGAATGGCCAGGGCGACGCGCATGAGCATGTGCTGGGGTCGTTC 147476 || || |||| |||||| ||| || || ||||| |||||||| ||||| ||||| Sbjct 2067998 TTCAATATCGTCGCTGTGAATACCCACTGCCACACGCATAAGCATGTGTTGGGGCCGTTC 2068057 Query 147477 CGCAATCACGTCATTG---ACTTTTAATAGATATCCATTGGTCAGAGTTTTGAAACCAAA 147533 ||| || | |||| | || | || ||| | ||| || ||||||||||| Sbjct 2068058 AGCA---ACTTGATTGCCAATCTTGAGCAGGTATGATCTCTCCAGCGTCTTGAAACCAAA 2068114 Query 147534 GTACTTGTAGTCGTAGTCCCTGTTGT 147559 || | ||||| | |||| | || || Sbjct 2068115 ATATTGGTAGTTGAAGTCTCGGTCGT 2068140 >seq1 Length=8230860 Score = 129 bits (142), Expect = 6e-25 Identities = 335/501 (67%), Gaps = 21/501 (4%) Strand=Plus/Minus Query 46980 ATCCACACGGAAATGTACAACCTTCTCATACACGCCCTCATCAAAGACG---AAGAGAAG 47036 |||||| |||||||||||| ||||||||| || || | || ||| |||||||| Sbjct 2004780 ATCCACTCGGAAATGTACAGCCTTCTCATTGACACCTATGTAAAGGACCCCAAAGAGAAG 2004721 Query 47037 CAAGCGACGCTTTTGAACGGTTTCGAGAGCATGCCCTGCGTGCGCAGAAAGGCCGAGTGG 47096 | || || ||| |||| | || || ||| | |||| || || || ||| Sbjct 2004720 ACATAT---CTGTTCGACGCCATCGACACAATCCCTTGCATTCGCAAGAAAGCAGACTGG 2004664 Query 47097 GCCATGAAGTACATTGAAAACGAAAACGTCACTCTG-GCCGAACGTTTGATCGCTTTCGC 47155 || || | || | || || | ||| || ||| |||| | | |||||||| Sbjct 2004663 GCTCTGCGATGGATATCAGACAAAGA-GTCGAGCTTTGCCCAACGACTAGTGGCTTTCGC 2004605 Query 47156 CATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTACATGAAAACCAA 47215 |||||| ||| |||||||||| || |||||| | || || | |||| | ||| Sbjct 2004604 AGCCGTCGAAGGCATCTTCTTCTCTGGATCCTTTGCATCCATCTTCTGGCTGAAGAGCAA 2004545 Query 47216 AGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCA 47275 |||| | |||||||||||||| || ||||||||| ||||| | ||||| ||| |||| Sbjct 2004544 AGGACTGATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGCATGCA 2004485 Query 47276 CACCAACTTTGCCTGTC-TCTACTACAACA-CTAGAGTCGATCAAAAGTTGGACGTGCCC 47333 ||| ||||||| || | | | | ||||| || || || ||| |||| | | Sbjct 2004484 CACGGACTTTGCGTGCCTTTTGATGCAACATCTGCAG-----CACAAGCCGGAC--CCAC 2004432 Query 47334 ACCGTCAGCG---ACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAG 47390 | | ||| || |||| | ||||||||||| || || | ||| || || |||| Sbjct 2004431 AAC-TCATCGAAAACATTATAACCGAAGCCGTCAGGATCGAAAAGGAATTCCTCACCGAT 2004373 Query 47391 GCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTT 47450 || || |||| | | | || |||||| || || | ||| | ||||||| || ||| Sbjct 2004372 GCCCTCCCCGTCGCACTGCTCGGCATGAACTCGAAGCTCATGTGTCAGTACATTGAGTTT 2004313 Query 47451 GTCGCCGACCGCCTGCTCGTT 47471 || || ||||| |||||| || Sbjct 2004312 GTTGCTGACCGTCTGCTCCTT 2004292 >seq7 Length=4110827 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || || | || || |||||| || | ||| ||| || || || ||||| |||| Sbjct 1062897 CCGCCACGCAGTCTCAGCACCAAGTGCAACGTGCTCTCCTTCTGGATGTTGTAGTCGCTG 1062956 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || | ||| || || ||| | |||| |||||||| || ||||| Sbjct 1062957 AGAGTCCGCCCGTCCTCCAACTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGAGGA 1063016 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||| ||| ||||| |||| |||| ||||| | ||||| || Sbjct 1063017 ATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTG-TCGATCGTGTCTGAGCTCTCCAC 1063075 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||| ||||| || || || ||||| || || ||||| Sbjct 1063076 CTCCAGCGTAATCGTCTTGCCAGTAAGTGTCTTTACGAAGATTTGCAT 1063123 Score = 86.0 bits (94), Expect = 6e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| || ||||| || || || || || || Sbjct 1063383 GTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCTTCGAGTTGCTTGCCG 1063442 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||||| |||||||| || || || ||||||||||||||| ||| || ||| Sbjct 1063443 GCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGATTTG 1063502 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| ||||| | |||||| || | || | || ||||| || || || Sbjct 1063503 ACATTGTCGATCGTGTCGCTGGACTCGACCTCAAGCGTGATGGTCTTGCCAGTAAGTGTC 1063562 Query 127097 TTTACAAAAATCTGCATGGC 127116 || || || || |||||||| Sbjct 1063563 TTCACGAAGATTTGCATGGC 1063582 >seq6 Length=4175021 Score = 87.8 bits (96), Expect = 2e-12 Identities = 129/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| |||| || || || ||| || || || || || ||| ||||| Sbjct 1383148 TTCTGGATGTTGTAGTCGCTCAGAGTTCGGCCATCTTCAAGTTGCTTGCCGGCGAAGATC 1383089 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTC 127044 ||||||||||| ||||| || ||||| |||||||| ||| || ||||| |||| || Sbjct 1383088 AATCGCTGCTGGTCGGGCGGGATGCCTTCCTTGTCTTGGATCTTGGACTTGACGTTG-TC 1383030 Query 127045 GACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104 || ||||| | |||||| || | ||| | || ||||| || || || || || || Sbjct 1383029 GATCGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 1382970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475499153578480