Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000835495.1_202015-02- 23] 277 sequences; 43,029,152 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq2 127 2e-24 seq7 93.3 4e-14 >seq2 Length=7068955 Score = 127 bits (140), Expect = 2e-24 Identities = 541/848 (64%), Gaps = 15/848 (2%) Strand=Plus/Minus Query 122916 CAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGCGACATCGAAAACGCGACC 122975 ||||| ||||| ||||| || || | || | ||| | ||| || ||||| || | | Sbjct 2068048 CAACACATGCTTATGCGTGTGGCAGTGGGTATTCACAGCGACGATATTGAAAAGGCCATC 2067989 Query 122976 GAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCGAGTCCCACTTTGTTCGCC 123035 || || ||| || | ||||| || || | || || ||||| ||||| | ||| | Sbjct 2067988 GAGACGTACAATCTCATGTCCCAGAAGTGCTTTACCCACGCTTCGCCCACCCTTTTCAAC 2067929 Query 123036 GCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTCACCTTGCGCGAAGACAGC 123095 ||||| || ||||| |||| || ||||| ||| | | || ||||||||| Sbjct 2067928 GCCGGAACCCCTCAACCTCAACTGTCCTCCTGTTTCTTGATTGACATGAAAGAAGACAGC 2067869 Query 123096 ATCACCGGTATCTATGAAACTTTGCGCGA-TTGCGCGTTGATTTCCAAATTTGGCGGCGG 123154 ||| || || ||||| || | | || ||| || |||| ||||| | || || Sbjct 2067868 ATCGAGGGAATATATGACACCCT-CAAGACTTGTGCCATGATCTCCAAGACAGCTGGAGG 2067810 Query 123155 CATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCGCATCAGAAGCACCGACGG 123214 || || | || | || | | | | | ||| | ||| | ||||| | || Sbjct 2067809 TATTGGTCTCAATGCCCATTGCATTCGTGCCACAGGATCCTACATTGCAGGCACCAATGG 2067750 Query 123215 AATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAACGCCGTGCGGCACGTCGA 123274 | | || |||||| ||||||| || || | |||||| | | || ||||||| Sbjct 2067749 CACCTCCAACGGGCTTATCCCCATGCTTCGCGTCTTCAATAATACTGCTCGCTACGTCGA 2067690 Query 123275 CCAGGGCGGCAAA---CGCAAAGGCGCGATGGCGATCTATCTAGAACCGTGGCACGTTGA 123331 ||||| ||||| ||| ||| || | || ||||| || || || ||||||| || Sbjct 2067689 TCAGGGTGGCAATAAGCGCCCAGGTGCTTTTGCCATCTACCTCGAGCCATGGCACGCAGA 2067630 Query 123332 TGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGCGGAAGAAAAGAAAGCCCGCGA 123391 |||| ||| ||||| || | | | ||| || |||||| | ||| ||||| Sbjct 2067629 CGTGTTCGACTTTTTGAACCTGAGAAAGAACCACGGCAAGGAAGAGGTTAGAGCACGCGA 2067570 Query 123392 TTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGACGCGT--AAAAGACGACGGC 123449 ||||| ||||| | ||| || || ||||| ||| ||| || | |||| || Sbjct 2067569 CTTGTTCTACGCCATGTGGACTCCTGACTTGTTCATGGAACGTGTCGAGAAGA--ACCAA 2067512 Query 123450 GTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGGCTTGAGCGACGTTTACGGCAATCAG 123509 | ||| | ||| | ||||| || | || ||| | |||||| || || | || Sbjct 2067511 GAATGGACTCTCTTCTGTCCTCATGAGGCACCTGGCCTTGCCGACGTCTATGGTGACGAG 2067452 Query 123510 TTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCAAACAGGTTAGTCAG---GTTCCG 123566 || ||| | |||| | ||| ||| || ||| | | | | ||| || | Sbjct 2067451 TTCAACGCTCTATACGAGAGATATGAGAAGGAGGGC---CGTGGTCGCCAGACTGTAAAG 2067395 Query 123567 GCACGTGATTTGTTCAAATTTATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATG 123626 || | | | | | ||| |||| |||| |||||| || ||||| || ||| Sbjct 2067394 GCTCAGAAACTATGGTATGCTATCCTCGAGGCACAGACCGAAACTGGGACGCCCTATATG 2067335 Query 123627 CTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGT 123686 |||||||| ||||||||||| || || | ||| |||| |||||||| || || | | Sbjct 2067334 CTCTACAAGGACGCCTGCAATAGAAAGAGCAACCAGAAGAACTTGGGGACCATCCGAAGC 2067275 Query 123687 AGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGCCGATCAAGTGGCCGTGTGTAAT 123746 ||||||||| | || ||| ||||||||| | | ||||| | || || ||||| ||| Sbjct 2067274 TCCAATCTTTGCACTGAGATTGTCGAATACACGGCTCCCGATGAGGTCGCTGTGTGCAAT 2067215 Query 123747 TTGGCTTC 123754 |||| || Sbjct 2067214 CTGGCCTC 2067207 Score = 84.2 bits (92), Expect = 2e-11 Identities = 174/259 (67%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 124065 TACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAAT 124124 || |||| |||| |||||||| | | | ||| ||| | || ||||||||||||||| Sbjct 2066890 TATGAAACATACGAAGGCAGCCCAGTGTCGCAAGGCATTCTTCAATACGACATGTGGAAT 2066831 Query 124125 GCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGACGCACGGT 124184 | || || || | |||||||| ||| || || ||| || | | || ||| Sbjct 2066830 GTCACTCCCTCAGACTTGTGGGATTGGGACGCCTTGAAAGCCGAGATTGCCAAACATGGT 2066771 Query 124185 TTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGA 124244 | || ||||| || | || || |||||| || || | ||| ||||||| | || Sbjct 2066770 ATTCGCAACTCTCTCCTTGTTGCTCCCATGCCCACTGCCTCGACTTCTCAAATCCTCGGC 2066711 Query 124245 AACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGC 124304 |||||||||| |||||| |||| ||| ||| | ||| || || || | ||||| Sbjct 2066710 AACAACGAATGCTTCGAACCGTACACATCTAATATCTACTCTCGCCGTGTCCTTGCCGGT 2066651 Query 124305 GATTTTCAAGTGATAAATC 124323 || || || || | |||| Sbjct 2066650 GAGTTCCAGGTTGTCAATC 2066632 >seq7 Length=4110827 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || || || |||| ||| | |||| ||| ||||| ||||| || || |||||| Sbjct 1062897 CCGCCACGCAGTCTCAGCACCAAGTGCAACGTGCTCTCCTTCTGGATGTTGTAGTCGCTG 1062956 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || || ||||| || || || ||| | |||| || ||||||||||| ||| Sbjct 1062957 AGAGTCCGCCCGTCCTCCAACTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGAGGA 1063016 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || || || || || || |||| || | || | ||||| || ||| || Sbjct 1063017 ATGCCCTCCTTGTCCTGGATCTTCGACTTGA-CGTTGTCGATCGTGTCTGAGCTCTCCAC 1063075 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || |||| ||| ||||| || || || ||||| || |||||||| Sbjct 1063076 CTCCAGCGTAATCGTCTTGCCAGTAAGTGTCTTTACGAAGATTTGCAT 1063123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452001634938920