Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000835495.1_202015-02-
23] 277 sequences; 43,029,152 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq7 120 7e-22
seq4 104 6e-17
seq5 96.9 8e-15
seq6 93.3 1e-13
>seq7
Length=4110827
Score = 120 bits (132), Expect = 7e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || || ||||| ||||| ||||| |||| ||||||||| | | || | || ||
Sbjct 1063140 AGCACGAGATGGAGCGTCGATTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCC 1063199
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
||||||||||| || || ||||| || ||||||||||| || || ||||| |||
Sbjct 1063200 TCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGCGGGATCCCTTCCTTGTCC 1063259
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||| ||| |||| ||||| | | ||| || |||| ||||||||||
Sbjct 1063260 TGGATCTTGCTCTTGACGTTGTCGATCGTGTCGCTCGATTCAACCTCCAGCGTGATCGTC 1063319
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || || || || || || |||||
Sbjct 1063320 TTGCCAGTAAGTGTCTTTACGAAGATTTG 1063348
Score = 120 bits (132), Expect = 7e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| ||||| || ||||||||||| |||| ||||||||| | || || | || |||
Sbjct 1063368 AGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCT 1063427
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| || ||||| ||||||||||| || |||||||||||||| || || || |||
Sbjct 1063428 TCGAGTTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCC 1063487
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| || || |||| ||||| | | || || || | |||||| |||
Sbjct 1063488 TGGATCTTGGATTTGACATTGTCGATCGTGTCGCTGGACTCGACCTCAAGCGTGATGGTC 1063547
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || || || ||||| || |||||
Sbjct 1063548 TTGCCAGTAAGTGTCTTCACGAAGATTTG 1063576
Score = 118 bits (130), Expect = 2e-21
Identities = 157/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| |||||||| || | ||| | || |||||| |||| ||||||||| | ||||
Sbjct 1062903 CGCAGTCTCAGCACCAAGTGCAACGTGCTCTCCTTCTGGATGTTGTAGTCGCTGAGAGTC 1062962
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| || || |||| |||||| || ||||| || || ||||||||||||||| ||| ||
Sbjct 1062963 CGCCCGTCCTCCAACTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGAGGAATGCCC 1063022
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||| ||||| ||| ||| |||| ||||||| | || || |||| |
Sbjct 1063023 TCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATCGTGTCTGAGCTCTCCACCTCCAGC 1063082
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| |||||||| || || || || || || || |||||
Sbjct 1063083 GTAATCGTCTTGCCAGTAAGTGTCTTTACGAAGATTTG 1063120
>seq4
Length=6030834
Score = 104 bits (114), Expect = 6e-17
Identities = 96/122 (79%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | || ||| |||||||| ||||| ||||| |||| ||||||||| | | |||
Sbjct 3720705 CGAAGACGCAAGACCAGGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTG 3720646
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| || ||||| || ||||| ||||||||||| || || ||||||||||| ||| |||
Sbjct 3720645 CGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGGTCCGGGGGAATGCCT 3720586
Query 199529 TC 199530
||
Sbjct 3720585 TC 3720584
>seq5
Length=4609732
Score = 96.9 bits (106), Expect = 8e-15
Identities = 145/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480
|| || ||||| ||||| ||||| |||| ||||||||| | | || | || || |||
Sbjct 1364994 ACGAGATGGAGCGTCGATTCCTTCTGGATGTTGTAGTCGGACCTGGTGCGGCCGTCCTCC 1365053
Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540
|||||||| || || ||||| || ||||||||||| | || ||||| |||| |
Sbjct 1365054 AGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGATGTGATCCCTTCCTTGTCCTAA 1365113
Query 199541 ATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTA 199600
||||| ||| | | | || ||||| | | || || |||| ||||||||||||
Sbjct 1365114 ATCTTGCTCTTGATGTTGTTGATTGTGTCGCTCGACTCAACCTCCAGCGTGATCGTCTTG 1365173
Query 199601 CCCGTGAGAGTTTTCACAAAAATTTG 199626
| || || || |||| ||||| ||
Sbjct 1365174 ACAGTAAGTGTCTTCATGAAAATCTG 1365199
>seq6
Length=4175021
Score = 93.3 bits (102), Expect = 1e-13
Identities = 129/181 (71%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499
|||| |||| ||||||||| || ||| | |||||||| || ||||| ||||||||||
Sbjct 1383150 CCTTCTGGATGTTGTAGTCGCTCAGAGTTCGGCCATCTTCAAGTTGCTTGCCGGCGAAGA 1383091
Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559
| | ||||||||||| || || ||||| || || ||||| ||| ||| |
Sbjct 1383090 TCAATCGCTGCTGGTCGGGCGGGATGCCTTCCTTGTCTTGGATCTTGGACTTGACGTTGT 1383031
Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619
||| ||||| | | || || || | ||||| ||||| |||||||| || || || |
Sbjct 1383030 CGATCGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 1382971
Query 199620 A 199620
|
Sbjct 1382970 A 1382970
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178917415933559
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |