Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000835495.1_202015-02- 23] 277 sequences; 43,029,152 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq7 136 9e-27 seq4 102 2e-16 seq2 93.3 9e-14 >seq7 Length=4110827 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 ||||||| || | ||| | ||| ||| || || || ||||| ||| ||||| | | Sbjct 1062906 AGTCTCAGCACCAAGTGCAACGTGCTCTCCTTCTGGATGTTGTAGTCGCTGAGAGTCCGC 1062965 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || || || | |||||| || ||||| || || || || ||||| ||||||||||| || Sbjct 1062966 CCGTCCTCCAACTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGAGGAATGCCCTCC 1063025 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||| || || || ||||||||| || || ||||| || || ||||| || || ||| Sbjct 1063026 TTGTCCTGGATCTTCGACTTGACGTTGTCGATCGTGTCTGAGCTCTCCACCTCCAGCGTA 1063085 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | |||||| || || | || |||||||| | |||||| Sbjct 1063086 ATCGTCTTGCCAGTAAGTGTCTTTACGAAGATTTGCAT 1063123 >seq4 Length=6030834 Score = 102 bits (112), Expect = 2e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || ||||| || || || || || || || ||||| |||| ||||| | || || Sbjct 3720697 CAAGACCAGGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTC 3720638 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 |||||| ||||| || |||||||| || ||||| ||||| || ||||||||||| ||||| Sbjct 3720637 TTCGAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGGTCCGGGGGAATGCCTTCCTTGTC 3720578 Query 195048 T 195048 | Sbjct 3720577 T 3720577 >seq2 Length=7068955 Score = 93.3 bits (102), Expect = 9e-14 Identities = 192/282 (68%), Gaps = 8/282 (3%) Strand=Plus/Minus Query 160589 TTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGT-GA-AAGA--CAATGGGGA 160644 ||||||||||| |||||| | || | |||||| | | || || |||| ||| || Sbjct 2067565 TTCTACGCCATGTGGACTCCTGACTTGTTCATGGAACGTGTCGAGAAGAACCAA----GA 2067510 Query 160645 TTGGAGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTT 160704 |||| || |||||||| |||| || ||||| |||| || || |||||| |||||| Sbjct 2067509 ATGGACTCTCTTCTGTCCTCATGAGGCACCTGGCCTTGCCGACGTCTATGGTGACGAGTT 2067450 Query 160705 CGAGACTCTTTATGAAAGATACGAAAAAGAGGGAAGAGCCAAAAAGGTCGTGAAGGCCCA 160764 | | |||| || || ||||| || || ||||| | | || || ||||| || Sbjct 2067449 CAACGCTCTATACGAGAGATATGAGAAGGAGGGCCGTGGTCGCCAGACTGTAAAGGCTCA 2067390 Query 160765 AGAACTGTGGCATCACATCCTTGTCGCCCAAGTCGAGGTGGGTATGCCCTTTATCGCATA 160824 |||| ||| || ||||| | || || ||| || | ||||| ||| || Sbjct 2067389 GAAACTATGGTATGCTATCCTCGAGGCACAGACCGAAACTGGGACGCCCTATATGCTCTA 2067330 Query 160825 CAAGGATGCCATCTGTCGCAAGAGTAACCAGAAGAACTTTGG 160866 |||||| ||| | | | ||||| |||||||||||||| || Sbjct 2067329 CAAGGACGCCTGCAATAGAAAGAGCAACCAGAAGAACTTGGG 2067288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109477662380459