Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000835495.1_202015-02- 23] 277 sequences; 43,029,152 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1 105 8e-18 seq2 98.7 1e-15 >seq1 Length=8230860 Score = 105 bits (116), Expect = 8e-18 Identities = 205/300 (68%), Gaps = 2/300 (1%) Strand=Plus/Plus Query 18982 CCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttt 19041 |||||||| | | || | || || || || || | || |||||||||||| | | Sbjct 2004491 CCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATCAGTCCTTTGCTC 2004550 Query 19042 tttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAA 19101 || | |||||| || || ||||| |||||||| ||||| || ||||| || ||||| ||| Sbjct 2004551 TTCAGCCAGAAGATGGATGCAAAGGATCCAGAGAAGAAGATGCCTTCGACGGCTGCGAAA 2004610 Query 19102 GCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGA-ATCCATTTCAGTGCCCAATC 19160 || ||||||| || || | || | || || | ||| |||||| ||| ||||| || Sbjct 2004611 GCCACTAGTCGTTGGGCAAAGCTCGACTC-TTTGTCTGATATCCATCGCAGAGCCCAGTC 2004669 Query 19161 AGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACATACGCTCATC 19220 || ||||| | || || ||||| || || | | || ||||| | ||| | Sbjct 2004670 TGCTTTCTTGCGAATGCAAGGGATTGTGTCGATGGCGTCGAACAGATATGTCTTCTCTTT 2004729 Query 19221 TGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTAT 19280 | || || ||||| | || || | | ||||||||||| || || ||||| || || Sbjct 2004730 GGGGTCCTTTACATAGGTGTCAATGAGAAGGCTGTACATTTCCGAGTGGATATTCTCCAT 2004789 >seq2 Length=7068955 Score = 98.7 bits (108), Expect = 1e-15 Identities = 352/543 (65%), Gaps = 8/543 (1%) Strand=Plus/Plus Query 48264 TCTTCATTGCCACTATTCCTTTTAAG-TTCAAGAAAGTCCATTATATCAGCATGCCATGG 48322 ||||| ||||| ||| || | || ||||| |||||| | | || || |||||||| Sbjct 2067585 TCTTCCTTGCCGTGGTTCTTTCTCAGGTTCAA-AAAGTCGAACACGTCTGCGTGCCATGG 2067643 Query 48323 TTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGC 48382 || | || || || | ||||||| || ||||| || || ||||| | || | || Sbjct 2067644 CTCGAGGTAGATGGCAAAAGCACCTGGGCGCTTATTGCCACCCTGATCGACGTAGCGAGC 2067703 Query 48383 AGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGA 48442 |||||| || | || | | ||| |||| || || || || | |||||||| || | Sbjct 2067704 AGTATTATTGAAGACGCGAAGCATGGGGATAAGCCCGTTGGAGGTGCCATTGGTGCCTGC 2067763 Query 48443 AATATAACTTCCACTAGCTCTTAT--ATTACTAATTGAAATACCTATACCACCTGCCATT 48500 ||| || ||| | || | || | | ||||| | || ||||| || || | Sbjct 2067764 AATGTAGGATCCTGTGGCACGAATGCAATGGGCATTGAGA--CCAATACCTCCAGCTGTC 2067821 Query 48501 TTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATC 48560 || || || | ||||| || ||||| ||||| ||||| || || || || ||| || Sbjct 2067822 TTGGAGATCATGGCACAAGTCTTGAGGGTGTCATATATTCCCTCGATGCTGTCTTCTTTC 2067881 Query 48561 ATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTT 48620 || | | | ||||| |||| ||| || ||| ||||| | || || | || Sbjct 2067882 ATGTCAATCAAGAAACAGGAGGACAGTTGAGGTTGAGGGGTTCCGGCGTTGAAAAGGGTG 2067941 Query 48621 GGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCT 48680 || || || || |||| || |||| || | | || || || || || | || Sbjct 2067942 GGCGAAGCGTGGGTAAAGCACTTCTGGGACATGAGATTGTACGTCTCGATGGCCTTTTCA 2068001 Query 48681 ATATCC-CATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAAC 48739 ||||| | || || ||||| | | |||||||| | ||| | ||| || | |||| | Sbjct 2068002 ATATCGTCGCTG-TGAATACCCACTGCCACACGCATAAGCATGTGTTGGGGCCGTTCAGC 2068060 Query 48740 AATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTT 48799 || || || || || | || |||||| | |||| || || ||||||||||| | Sbjct 2068061 AACTTGATTGCCAATCTTGAGCAGGTATGATCTCTCCAGCGTCTTGAAACCAAAATATTG 2068120 Query 48800 GTA 48802 ||| Sbjct 2068121 GTA 2068123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562106853698280