Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000835495.1_202015-02- 23] 277 sequences; 43,029,152 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq4 114 2e-19 seq2 114 2e-19 seq197 105 8e-17 seq1 95.1 1e-13 >seq4 Length=6030834 Score = 114 bits (126), Expect = 2e-19 Identities = 101/126 (80%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227 || || ||| | || || || || ||||| ||||| ||||| || |||| ||| | || Sbjct 2262965 CTTTTCGAGATCATTCTGGCGGCAAACTATCTCGATATCAAAGCTTTGCTGGATGTCGGC 2262906 Query 1592228 TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTT 1592287 |||||| |||| |||||||||||||||||||||||||| |||||||| || ||||| || Sbjct 2262905 TGCAAGACTGTCGCCAACATGATCAAGGGCAAGTCGCCGGAGGAGATACGTAAGACGTTC 2262846 Query 1592288 AACATC 1592293 || ||| Sbjct 2262845 AATATC 2262840 >seq2 Length=7068955 Score = 114 bits (126), Expect = 2e-19 Identities = 201/290 (69%), Gaps = 2/290 (1%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||| ||||||||||| || || | || |||||||| |||||||| | || |||||||| Sbjct 2067686 CTGATCGACGTAGCGAGCAGTATTATTGAAGACGCGAAGCATGGGGATAAGCCCGTTGGA 2067745 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 ||| |||||||| || | ||||| || | ||| || | || || | || Sbjct 2067746 GGTGCCATTGGTGCCTGCAATGTAGGATCCTGTGGCACGAATGCAATGGGCATTGAGACC 2067805 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 || || || || | ||||||||| | || || ||||| ||||| || || ||||| Sbjct 2067806 AATACCTCCAGCTGTCTTGGAGATCATGGCACAAGTCTTGAGGGTGTCATATATTCCCTC 2067865 Query 1630245 GATCGAGTCGGCCTTCATGTCCA-CGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGC 1630303 ||| ||| | |||||||| | | ||||| || || || ||| || || | || | Sbjct 2067866 GATGCTGTCTTCTTTCATGTCAATCAAGAAA-CAGGAGGACAGTTGAGGTTGAGGGGTTC 2067924 Query 1630304 CGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATG 1630353 |||||||||| || ||||||| || ||| || ||| | | |||||| Sbjct 2067925 CGGCGTTGAAAAGGGTGGGCGAAGCGTGGGTAAAGCACTTCTGGGACATG 2067974 Score = 89.7 bits (98), Expect = 6e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 1628448 CATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTT 1628507 ||| || | |||| ||||||| ||||| || | |||||| || | ||| ||||| Sbjct 2067533 CATGAACAAGTCAGGAGTCCACATGGCGTAGAACAAGTCGCGTGCTCTAACCTCTTCCTT 2067592 Query 1628508 GCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTA 1628567 ||||||||||||| | |||| | |||||| | ||| |||||||| ||||| ||||| Sbjct 2067593 GCCGTGGTTCTTTCTCAGGTTCAAAAAGTCGAACACGTCTGCGTGCCATGGCTCGAGGTA 2067652 Query 1628568 GCAGGCAAAGGCGCCCTTGCGCTT 1628591 | |||||| || || |||||| Sbjct 2067653 GATGGCAAAAGCACCTGGGCGCTT 2067676 >seq197 Length=2309 Score = 105 bits (116), Expect = 8e-17 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 1592180 ATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTG 1592239 ||||| || ||||| || |||||||| |||||| || | ||| || |||||| | || Sbjct 991 ATCCTGGCGGCCAATTATCTCGACATTAAGCCTTTGTTGGATACCGGATGCAAGACCGTC 932 Query 1592240 GCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTAC 1592299 ||||| ||||||||||| ||||||||||| || |||||| | || || || |||||| || Sbjct 931 GCCAATATGATCAAGGGGAAGTCGCCCGAAGAAATCCGCCAAACGTTCAATATCAAGAAC 872 Query 1592300 G 1592300 | Sbjct 871 G 871 >seq1 Length=8230860 Score = 95.1 bits (104), Expect = 1e-13 Identities = 196/279 (70%), Gaps = 17/279 (6%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || ||||| ||| ||| | |||||| |||| |||||||||||| || || || Sbjct 2004491 CCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATCAGTCCTTTGCTC 2004550 Query 869240 TTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGC-AA 869297 || ||||| ||||||| ||| || || ||||| |||||||| |||||||| || || Sbjct 2004551 TTCAGCCAGAAGATGGATGCA-AAGGATCCAGAGAAGAAGATGCCTTCGACGGCTGCGAA 2004609 Query 869298 AGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGT-TG--ATCCACTTCATCG 869354 |||| | || || | ||||||| |||| ||| |||| || ||||| || | Sbjct 2004610 AGCC-ACTAGTCGTTGGGCAAAG--CTCGA----CTCTTTGTCTGATATCCATCGCAGAG 2004662 Query 869355 CCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCG-CGAA-AGAGGTGGTC 869412 ||||||| || || || | | | || | |||||||||||| |||| ||| || Sbjct 2004663 CCCAGTCTGCTTTCTTGCGAATGCAAGGGATTGTGTCGATGGCGTCGAACAGATATG--T 2004720 Query 869413 CTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAG 869451 ||| || |||||||| ||||||||||| || || || Sbjct 2004721 CTTCTCTTTGGGGTCCTTTACATAGGTGTCAATGAGAAG 2004759 Score = 93.3 bits (102), Expect = 5e-13 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 1852499 TTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGATCTTGACCCGACAGCCGGCCTGGAGA 1852558 |||||||| |||| | ||| |||| ||||||||||||||||||||| || |||| Sbjct 6870227 TTGTCGAGAAACCCGTGAATGTCCGCAAGGAGGATCTTGACCCGACAGCCCGCTCGGAGG 6870286 Query 1852559 AAGTCGGCCAGTTTGAAGATGGGCACAAAGTAGCCTAGGTGCGGGTTGCCCGTCGGCGCC 1852618 |||| || | ||| | || ||||| |||||||| |||||| | || |||| || Sbjct 6870287 AAGTGCGCAATTTTCATCATCGGCACGAAGTAGCCGCAGTGCGGTCTTCCTGTCGTAGCA 6870346 Query 1852619 GTGCCCCAATATATGATCA 1852637 |||||||| || || |||| Sbjct 6870347 GTGCCCCAGTAGATTATCA 6870365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107116468082809