Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000835495.1_202015-02- 23] 277 sequences; 43,029,152 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq2 147 2e-30 seq7 104 2e-17 seq5 82.4 7e-11 >seq2 Length=7068955 Score = 147 bits (162), Expect = 2e-30 Identities = 570/872 (65%), Gaps = 33/872 (4%) Strand=Plus/Plus Query 139084 GAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACAC 139143 ||||| | |||||||| || || || ||||| | ||||||||||||| || | || Sbjct 2067207 GAGGCCAGATTGCACACAGCGACCTCATCGGGAGCCGTGTATTCGACAATCTCAGTGCAA 2067266 Query 139144 AAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCT 139203 | ||| | ||| || || || || | || ||||| |||| || || || || Sbjct 2067267 AGATTGGAGCTTCGGATGGTCCCCAAGTTCTTCTGGTTGCTCTTTCTATTGCAGGCGTCC 2067326 Query 139204 TTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAAT-GAATTTGAACA- 139261 ||||| |||||||| || || |||||||| |||| ||| | || | || | || Sbjct 2067327 TTGTAGAGCATATAGGGCGTCCCAGTTTCGGTCTGTGCCTCGAGGATAGCAT---ACCAT 2067383 Query 139262 AGTCCCT-AGCTTGTA---TTTGACGCACGTAAAGTTCGTCGCGCTCGTACTTTTCGTAG 139317 ||| || ||| | || | || || | | | | || ||| || | ||||| Sbjct 2067384 AGTTTCTGAGCCTTTACAGTCTGGCGACC---ACGGCCCTCCTTCTCATATCTCTCGTAT 2067440 Query 139318 AGTTCGTCGAA-TCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACAT 139376 || ||| ||| |||| |||| ||| |||| | ||| | | || | |||||| | Sbjct 2067441 AGAGCGTTGAACTCGT-CACCATAGACGTCGGCAAGGCCAGGTGCCTCATGAGGACAGAA 2067499 Query 139377 GAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGC 139436 ||| | |||| | |||| || ||| || |||||||| || ||| |||||| || Sbjct 2067500 GAGAGTCCATTCTTGGTTCTTCTCGACACGTTCCATGAACAAGTCAGGAGTCCACATGGC 2067559 Query 139437 GAACAGCAAATCGCGCGCCTTCTTA--TCTTCCGAACCCATGTTACGTTTCATGTTAAGG 139494 | | | ||| ||||| || ||| | |||||| || ||| | ||| ||| | Sbjct 2067560 GTAGAACAAGTCGCGTGC--TCTAACCTCTTCCTTGCCGTGGTTCTTTCTCAGGTTCAAA 2067617 Query 139495 AAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCG---T 139551 || || || ||||| ||||||||||| || || |||||||| | || ||| || Sbjct 2067618 AAGTCGAACACGTCTGCGTGCCATGGCTCGAGGTAGATGGCAAAAGCACCTGGGCGCTTA 2067677 Query 139552 TTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGA 139611 |||||||| |||||||||| || ||| ||||||||| ||||| | ||| || || Sbjct 2067678 TTGCCACCCTGATCGACGTAGCGAGCAGTATTATTGAAGACGCGAAGCATGGGGATAAGC 2067737 Query 139612 CCGCTCGCTGTTCCGTTGGTGCTACGGATG--GGACTGTTGCGAGCTCGGACGTCATGTA 139669 ||| | | || || ||||||| ||| ||| | || | || || | | ||| Sbjct 2067738 CCGTTGGAGGTGCCATTGGTGCCTGCAATGTAGGA-TCCTGTG-GCACGAATGCAATGGG 2067795 Query 139670 CATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAA-TCGCGTAATGTCTCG 139728 |||||| || || || || | ||||| || | | ||| || | | || || Sbjct 2067796 CATTGAGACCAATACCTCCAGCTGTCTTGGAGATCATGGCACAAGTCTTG-AGGGTGTCA 2067854 Query 139729 TATATACCTCTTATGCTGTCGTCCTGCATCGTGA--CCAGAAAGCATGACGAAAGTTGCG 139786 ||||| || |||||||| || | ||| || | | ||||| || || || ||||| | Sbjct 2067855 TATATTCCCTCGATGCTGTCTTCTTTCAT-GTCAATCAAGAAA-CAGGAGGACAGTTGAG 2067912 Query 139787 GTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAA-CATTTGTTTCGAC 139845 || | || ||||| || || || || ||||| || || || || | ||| Sbjct 2067913 GTTGAGGGGTTCCGGCGTTGAAAAGGGTGGGCGAAGCGTGGGTAAAGCACTT-CTGGGAC 2067971 Query 139846 ATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACT 139905 || | | |||||| |||||||| | ||||||| | ||| ||||| || | || Sbjct 2067972 ATGAGATTGTACGTCTCGATGGCCTTTTCAATATCGTCGCTGTGAATACCCACTGCCACA 2068031 Query 139906 CGCATCAGCATATGTTGGATCCGTTCGGCCAC 139937 ||||| ||||| |||||| |||||| || || Sbjct 2068032 CGCATAAGCATGTGTTGGGGCCGTTCAGCAAC 2068063 >seq7 Length=4110827 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || || || || || || ||||| || || ||| | | | Sbjct 1063351 ATGCAAATCTTCGTAAAGACACTTACTGGCAAGACGATCACGCTGGAGGTTGAATCGAGC 1063292 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| ||||| || || ||||| || Sbjct 1063291 GACACGATCGACAACGTCAAGAGCAAGATCCAGGACAAGGAAGGGATCCCGCCCGACCAG 1063232 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||||| || || ||||||||||| | | | || || || ||| Sbjct 1063231 CAGCGCCTGATCTTTGCGGGCAAGCAGCTGGAGGACGGCCGCACGCTCTCGGACTACAAC 1063172 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||||||||| || || | ||| | || | ||||| || Sbjct 1063171 ATCCAGAAGGAATCGACGCTCCATCTCGTGCTCCGGCTCCGCGGCGG 1063125 >seq5 Length=4609732 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || || || || || || | || || || ||||| || || || | | | Sbjct 1365202 ATGCAGATTTTCATGAAGACACTTACTGTCAAGACGATCACGCTGGAGGTTGAGTCGAGC 1365143 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | | | | || ||||| | ||||| ||||| || | |||| || Sbjct 1365142 GACACAATCAACAACATCAAGAGCAAGATTTAGGACAAGGAAGGGATCACATCCGACCAG 1365083 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||||| || || ||||||||||| | | || ||| || || ||| Sbjct 1365082 CAGCGCCTGATCTTTGCGGGCAAGCAGCTGGAGGACGGCCGCACCAGGTCCGACTACAAC 1365023 Query 24884 ATTCAAAAGGAATCGACACTACA 24906 || || ||||||||||| || || Sbjct 1365022 ATCCAGAAGGAATCGACGCTCCA 1365000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449896042229560