Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000835495.1_202015-02- 23] 277 sequences; 43,029,152 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1 102 1e-15 seq197 96.9 5e-14 seq4 96.9 5e-14 seq2 89.7 8e-12 >seq1 Length=8230860 Score = 102 bits (112), Expect = 1e-15 Identities = 216/311 (69%), Gaps = 21/311 (7%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || ||||| ||| ||| | |||||| ||| |||||||||||| || || || Sbjct 2004491 CCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATCAGTCCTTTGCTC 2004550 Query 794401 TTGAGCCAAAAGATGG---CACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGC- 794456 || ||||| ||||||| || || | | | ||||| |||||||| |||||||| || Sbjct 2004551 TTCAGCCAGAAGATGGATGCAAAGGATC---CAGAGAAGAAGATGCCTTCGACGGCTGCG 2004607 Query 794457 AAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGT-TGAT--CCACTTCAT 794513 |||||| || || || | |||||| | | | |||||||| |||| ||| || Sbjct 2004608 AAAGCC-ACTAGTCGTTGGGCAAAGCT--CGA----CTCTTTGTCTGATATCCATCGCAG 2004660 Query 794514 CGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCG-CGAA-AGAGGTGG 794571 ||||| ||||| || || | | | || | |||||||||||| |||| ||| || Sbjct 2004661 AGCCCAGTCTGCTTTCTTGCGAATGCAAGGGATTGTGTCGATGGCGTCGAACAGATATG- 2004719 Query 794572 TCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGG 794631 |||||| |||||||| || |||||||| ||||| || ||| | || |||||| Sbjct 2004720 -TCTTCTCTTTGGGGTCCTTTACATAGGTGTCAATGAGAAGGCTGTACATTTCCGAGTGG 2004778 Query 794632 ATGTTTTCGAT 794642 || || || || Sbjct 2004779 ATATTCTCCAT 2004789 >seq197 Length=2309 Score = 96.9 bits (106), Expect = 5e-14 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 2035641 ATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTG 2035700 ||||| || ||||| || |||||||| ||||| | | ||| || ||||||||||| Sbjct 991 ATCCTGGCGGCCAATTATCTCGACATTAAGCCTTTGTTGGATACCGGATGCAAGACCGTC 932 Query 2035701 GCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAGTAC 2035760 ||||| | |||||||| ||||||||||| || |||||| | || || || |||||| || Sbjct 931 GCCAATATGATCAAGGGGAAGTCGCCCGAAGAAATCCGCCAAACGTTCAATATCAAGAAC 872 Query 2035761 G 2035761 | Sbjct 871 G 871 >seq4 Length=6030834 Score = 96.9 bits (106), Expect = 5e-14 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 2035614 GTCGACCAACCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCC 2035673 ||||||||| | || || ||| | || || || || ||||| ||||| ||||| | Sbjct 2262980 GTCGACCAAGAAATGCTTTTCGAGATCATTCTGGCGGCAAACTATCTCGATATCAAAGCT 2262921 Query 2035674 CTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGAC 2035733 | || ||| | || |||||||| || |||||| | ||||||||||||||||| ||||| Sbjct 2262920 TTGCTGGATGTCGGCTGCAAGACTGTCGCCAACATGATCAAGGGCAAGTCGCCGGAGGAG 2262861 Query 2035734 ATCCGCAAGACCTTTAACATC 2035754 || || ||||| || || ||| Sbjct 2262860 ATACGTAAGACGTTCAATATC 2262840 Score = 91.5 bits (100), Expect = 2e-12 Identities = 126/174 (72%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||| ||||| ||||||||||||||||| || ||||||||| |||| ||||| || ||| Sbjct 4903038 GTATTTGGTCACGGCCTTGGTACCCTCGGACACGGCGTGCTTGGCGAGTTCACCAGGCAG 4903097 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG 1485590 ||| || | |||| || |||||||| |||| | ||| ||| |||||| || | Sbjct 4903098 GATGAGTCTGACGGATGTTTGGATCTCTCGGGAGGAGATTGTGGACTTCTTGTT-GTAGG 4903156 Query 1485591 C-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACG 1485643 | || || | ||| |||||| ||| || |||| ||||| ||||||| Sbjct 4903157 CAGCAAGCTTGGAGGCTTCGGTGGCGACACGCTCGAAGATGTCTGAAACAAACG 4903210 >seq2 Length=7068955 Score = 89.7 bits (98), Expect = 8e-12 Identities = 277/432 (64%), Gaps = 12/432 (3%) Strand=Plus/Plus Query 2071578 GACGACCTCGGTGCACAGGTTGGCCGACATCG--TGGTGCCCAGGTTCTGCTGGTTGCTG 2071635 ||| | ||| ||||| || |||| | ||| |||| |||| ||||| ||||||||| Sbjct 2067251 GACAATCTCAGTGCAAAGATTGGAG--CTTCGGATGGTCCCCAAGTTCTTCTGGTTGCTC 2067308 Query 2071636 GTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTG 2071695 | ||| ||||||||||| ||||| ||||||| || || ||| |||| ||| | Sbjct 2067309 TTTCTATTGCAGGCGTCCTTGTAGAGCATATAGGGCGTCCCAGTTTCGGTCTGTGCCTCG 2067368 Query 2071696 ACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCGCG----CGGCCCTNNNN 2071751 | ||| || |||| | || | || || | || ||| ||||||| Sbjct 2067369 AGGATAGCATACCATAGTTTCTGAGCCTTTACAGT----CTGGCGACCACGGCCCTCCTT 2067424 Query 2071752 NNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGGCGC 2071811 | || |||| || || | || | | ||| ||||| || || Sbjct 2067425 CTCATATCTCTCGTATAGAGCGTTGAACTCGTCACCATAGACGTCGGCAAGGCCAGGTGC 2067484 Query 2071812 CTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTC 2071871 ||| || || ||||| | ||| || | || | || || ||| |||| ||| Sbjct 2067485 CTCATGAGGACAGAAGAGAGTCCATTCTTGGTTCTTCTCGACACGTTCCATGAACAAGTC 2067544 Query 2071872 GCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTT 2071931 ||||||| | |||| || | ||||| || | ||| ||||||||||||||||| Sbjct 2067545 AGGAGTCCACATGGCGTAGAACAAGTCGCGTGCTCTAACCTCTTCCTTGCCGTGGTTCTT 2067604 Query 2071932 TTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGC 2071991 | |||||| | |||||| | ||| |||||||| ||||| |||||| |||||| || Sbjct 2067605 TCTCAGGTTCAAAAAGTCGAACACGTCTGCGTGCCATGGCTCGAGGTAGATGGCAAAAGC 2067664 Query 2071992 GCCCTTGCGCTT 2072003 || |||||| Sbjct 2067665 ACCTGGGCGCTT 2067676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916216934246603