Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000835495.1_202015-02- 23] 277 sequences; 43,029,152 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq1 104 2e-17 seq7 91.5 1e-13 >seq1 Length=8230860 Score = 104 bits (114), Expect = 2e-17 Identities = 230/338 (68%), Gaps = 19/338 (6%) Strand=Plus/Minus Query 50277 TTGGCCGAACGTTTAGTGGCGTTTGCCATAGTTGAAGGTGTGtttttttCCGGTAGCTTT 50336 || ||| |||| ||||||| || || || ||||| | || || || || |||| Sbjct 2004630 TTTGCCCAACGACTAGTGGCTTTCGCAGCCGTCGAAGGCATCTTCTTCTCTGGATCCTTT 2004571 Query 50337 GCAGCCATATTTTACATTAAAACCTTAGGCATAATGCCCGGCCTCACGTTTAGCAACGAG 50396 ||| |||| || | | || | | ||| | |||||||||||||| || ||||||| Sbjct 2004570 GCATCCATCTTCTGGCTGAAGAGCAAAGGACTGATGCCCGGCCTCACCTTCTCCAACGAG 2004511 Query 50397 TTGATTTCGCGCGACGAAGGAATGCACACAGACTTTGCGTG---TTTG-TACTACAATAC 50452 | || || || ||||| || |||||||| ||||||||||| |||| | | || || Sbjct 2004510 CTCATCTCTCGTGACGAGGGCATGCACACGGACTTTGCGTGCCTTTTGATGCAAC-ATCT 2004452 Query 50453 GC-GCGTAA--ATGAAAAATTA-TCATACGAAACAATTTTGGACATGTTCAAAGAAGCCG 50508 || || || || | | |||| ||||| |||| | | ||||||| Sbjct 2004451 GCAGCACAAGCCGGACCCACAACTCAT-CGAAA---------ACATTATAACCGAAGCCG 2004402 Query 50509 TCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCATTGTTGGGCATGAACG 50568 || |||||||| || || |||| || || | ||||| ||| || | ||||||||| Sbjct 2004401 TCAGGATCGAAAAGGAATTCCTCACCGATGCCCTCCCCGTCGCACTGCTCGGCATGAACT 2004342 Query 50569 CAGACATGATGTGCGAGTACATTGAGTTTGTTGCAGAC 50606 | | | ||||| ||||||||||||||||||| ||| Sbjct 2004341 CGAAGCTCATGTGTCAGTACATTGAGTTTGTTGCTGAC 2004304 >seq7 Length=4110827 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || || || || || |||||||| ||| || |||| |||||||||||| || || Sbjct 1063383 GTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCTTCGAGTTGCTTGCCG 1063442 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 || ||||||| || ||||| || || || ||||| || ||||| || || ||| Sbjct 1063443 GCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGATTTG 1063502 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | |||||| ||| || || |||| || | |||||||| || | ||| Sbjct 1063503 ACATTGTCGATCGTGTCGCTGGACTCGACCTCAAGCGTGATGGTCTTGCCAGTAAGTGTC 1063562 Query 137395 TTTACGAATATTTGCATAGC 137414 || ||||| |||||||| || Sbjct 1063563 TTCACGAAGATTTGCATGGC 1063582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488542308416400