Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000835495.1_202015-02- 23] 277 sequences; 43,029,152 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq2 188 7e-43 seq1 125 7e-24 seq7 123 2e-23 seq6 105 6e-18 seq5 96.9 3e-15 >seq2 Length=7068955 Score = 188 bits (208), Expect = 7e-43 Identities = 1116/1757 (64%), Gaps = 59/1757 (3%) Strand=Plus/Plus Query 148053 GACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGA--GTCGCTTTA 148110 |||||| |||||||||||| || |||||||| || ||||||| | || ||| | | Sbjct 2066427 GACTGGGACTGGTCAATGAAGGCACCACGGTCCGCTGCCATTTGCAGGACGGTC-CGCTG 2066485 Query 148111 TCTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGC 148170 | | || ||||| | |||||||| || ||||| | | |||| | | |||| Sbjct 2066486 GC-TGATTTCCCATACGGTCTTGTATAGAGCTTTGATGTCCGCAGGAACGTTGGGGATGT 2066544 Query 148171 GCTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGA 148230 || | |||||||| | || | ||| |||| ||| | ||| | ||||| | Sbjct 2066545 TTTGGATCGAGCCGCCTTCGGCGATGATCCGATTCTTCATATTGTCGGACCATAGGCCCA 2066604 Query 148231 GCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGC 148290 |||| || || | | ||| | |||| || ||||| ||||| ||||| || || | Sbjct 2066605 AGTCGACGAGATCCTTCAGCAGCCAGGGATTGACAACCTGGAACTCACCGGCAAGGACAC 2066664 Query 148291 GCCGCAGA-TACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGC 148349 | || ||| || | || || ||||||| || | ||||||||||| | || || Sbjct 2066665 GGCG-AGAGTAGATATTAGATGTGTACGGTTCGAAGCATTCGTTGTTGCCGAGGATTTGA 2066723 Query 148350 GCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTT 148409 | |||| || ||||||||| || || || || |||||||| | ||| | || Sbjct 2066724 GAAGTCGAGGCAGTGGGCATGGGAGCAACAAGGAGAGAGTTGCGAATACCATGTTTGGCA 2066783 Query 148410 ATTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCG 148469 || | | |||| || |||| ||||| | || || || || |||||||||||| Sbjct 2066784 ATCTCGGCTTTCAAGGCGTCCCAATCCCACAAGTCTGAGGGAGTGACATTCCACATGTCG 2066843 Query 148470 TACTGCAGAATGCC--GCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCG 148527 || || |||||||| ||| | | |||||||| ||||| | || | ||| ||| Sbjct 2066844 TATTGAAGAATGCCTTGCGAC--ACTGGGCTGCCTTCGTATGTTTCATATGTTCCCTGCT 2066901 Query 148528 CCGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCC 148587 || |||||||| || || ||| || | | ||| || |||||| ||||| Sbjct 2066902 CCTTTGCCAGTTCACAAGAAGCAGTGAGAGCAGCATGGTAGATGGTCTCGAAGATTTGGA 2066961 Query 148588 TGTTGAGCAGCGCCGCCGACTCG---CTTTCGTACGGCATACGCAGCCGCACAAACGCGT 148644 | || | | ||| | |||| ||| | || | ||||||| | || |||| Sbjct 2066962 TATTCA--ATTGCC-TGGCCTCGGGAGAGTCGAAAGGAAGACGCAGCGCAAGGAAGGCGT 2067018 Query 148645 CGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGC 148704 |||| || || || || || | || | ||| |||||| | |||| ||| Sbjct 2067019 CGGCGAGACCTTGAACTCCGAGACCGACGGGTCGGTGTCGGAAGTTGCTCTTCTTCGCTT 2067078 Query 148705 TCTCGAGCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTG 148764 || || |||| |||| ||||| ||||||| || ||||| ||| |||| | Sbjct 2067079 CAGGGACAGGGTAGTAGTTGATATCGATAATCTTGTTTAGGTTGCGAGTCACAACCTGAG 2067138 Query 148765 TAA--TTCTG--------CGCAG-CA-ATTCAAAATCGTACTTGTCATCTACG-ATGCAT 148811 | | | || || || || |||| | ||| |||| || ||| ||| | Sbjct 2067139 TGACCTCATGAAGACGACCGAAGTCATATTC-ACCTCGAGCTTG--GTCGACGAATG--T 2067193 Query 148812 CGGTTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCT 148871 ||| | || | ||||| ||||||||||| || |||||| || || |||| || Sbjct 2067194 CGG--GAGAGCCAGGGAGGCCAGATTGCACACAGCGACCTCATCGGGAGCCGTGTATTCG 2067251 Query 148872 ACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTG 148931 || ||||| | ||| |||||| || | ||| |||| |||||| || |||||||| Sbjct 2067252 ACAATCTCAGTGCAAAGATTGGAGCTTCGGATGGTCCCCAAGTTCTTCTGGTTGCTCTTT 2067311 Query 148932 CTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCA-- 148989 || ||||| ||||||||||| ||||| || || |||||||| ||| | || | Sbjct 2067312 CTATTGCAGGCGTCCTTGTAGAGCATATAGGGCGTCCCAGTTTCGGTCTGTGCCTCGAGG 2067371 Query 148990 CTATGAACCGATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCTCCTGCTCGT 149049 || | | || || | ||| || || ||| || ||||||| ||| | Sbjct 2067372 ATAGCATACCAT--AGTTTCTGAGCCTTTACAGTCTGGCGACCACGGCCCTCCTTCTCAT 2067429 Query 149050 A--TAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTT 149107 | | ||||| ||| | |||| | || || ||| ||| | || || || || Sbjct 2067430 ATCTCTCGTATAGAGC--GTTGAACTCGTCACCATAGACGTCGGCAAGGCCAGGTGCCTC 2067487 Query 149108 GTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGG 149167 || || || | ||| | ||| | || | | || || | ||| |||| || || Sbjct 2067488 ATGAGGACAGAAGAGAGTCCATTCTTGGTTCTTCTCGACACGTTCCATGAACAAGTCAGG 2067547 Query 149168 CACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCG 149227 ||| | ||||| | | |||||| || | ||||| ||| ||| | Sbjct 2067548 AGTCCACATGGCGTAGAACAAGTCGCGTGCTCTAACCTCTTCCTTGCCGTGGTTCTTTCT 2067607 Query 149228 CAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCC 149287 |||||| | | | ||| | ||| |||||||| ||||| | ||| | || | || || Sbjct 2067608 CAGGTTCAAAAAGTCGAACACGTCTGCGTGCCATGGCTCGAGGTAGATGGCAAAAGCACC 2067667 Query 149288 CTTGCGC---TTGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCAT 149344 |||| ||||| ||||| ||||||| ||| | | || || || || |||| ||| Sbjct 2067668 TGGGCGCTTATTGCCACCCTGATCGACGTAGCGAGCAGTATTATTGAAGACGCGAAGCAT 2067727 Query 149345 AGGTTCAATGCCACTGGCAGTGCCGTTAGTAGAGCTAATG--CGA--CTGCCGCGCGCTC 149400 || || || ||| ||||| || || |||| || ||| || || Sbjct 2067728 GGGGATAAGCCCGTTGGAGGTGCCATTGGTGCCTGCAATGTAGGATCCTGTGGCACGAAT 2067787 Query 149401 GCACTTTGTGCACGTTGACGCCGATGCCGCC-GCCGTACTTTGAGATGGCCGCGC-AGTC 149458 ||| || ||| |||| || || || || || || ||| ||||| || | |||| Sbjct 2067788 GCA--ATGGGCA--TTGAGACCAATACCTCCAGCTGT-CTTGGAGATCATGGCACAAGTC 2067842 Query 149459 GCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGA 149518 ||| || || || |||||||||||||| |||||| | || || || || Sbjct 2067843 -TTGAGGGTGTCATATATTCCCTCGATGCTGTCTTCTTTCATGTCAATCAAGAAACAGGA 2067901 Query 149519 GCACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATA 149578 | ||| ||| || | | || ||||| ||| | |||||| ||||| ||||| | Sbjct 2067902 GGACAGTTGAGGTTGAGGGGTTCCGGCGTTGAAAAGGGTGGGCGAAGCGTGGGTAAAGCA 2067961 Query 149579 TTTCTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCC 149638 |||||| ||| | | ||||| ||||| | || || || |||| || || || Sbjct 2067962 CTTCTGGGACATGAGATTGTACGTCTCGATGGCCTTTTCAATATCGTCGCTGTGAATACC 2068021 Query 149639 TATGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAG 149698 | || || ||||| ||||| || || || || || || |||| || ||||| ||||| Sbjct 2068022 CACTGCCACACGCATAAGCATGTGTTGGGGCCGTTCAGCAACTTGATTGCCAATCTTGAG 2068081 Query 149699 CAAGTAGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTG 149758 || ||| | || || |||||| | ||||| || | ||||| ||||| ||| ||| Sbjct 2068082 CAGGTATGATCTCTCCAGCGTCTTGAAACCAAAATATTGGTAGTTGAAGTCTCGGTCGTA 2068141 Query 149759 GTCAATGGCGGCGTCGA 149775 | |||| || | || || Sbjct 2068142 GACAATTGCAGAGTTGA 2068158 >seq1 Length=8230860 Score = 125 bits (138), Expect = 7e-24 Identities = 278/411 (68%), Gaps = 21/411 (5%) Strand=Plus/Plus Query 120465 GAGCAGTCGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAG 120524 |||||| ||||| || |||||||||||||||| |||||| || || ||||||||| || Sbjct 2004295 GAGCAGACGGTCAGCAACAAACTCAATGTACTGACACATGAGCTTCGAGTTCATGCCGAG 2004354 Query 120525 CAACGCCACCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAA 120584 || || || || | || |||| || ||||| || || || || || | | Sbjct 2004355 CAGTGCGACGGGGAGGGCATCGGTGAGGAATTCCTTTTCGATCCTGACGGCTTCGGTTAT 2004414 Query 120585 CATGG---CGAGCA-TAGTGTGGCCGGGCATCTTGTGTTC--GATGCGCGTTCGGTAGTA 120638 ||| ||| | | ||| | |||| |||||| | |||| || | Sbjct 2004415 AATGTTTTCGATGAGTTGTGGGTCCGG----CTTGTGCTGCAGATGTTGCATCA-----A 2004465 Query 120639 CAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGT 120698 |||||||||||||||||||||| ||||||||| || || || ||||||||| || || Sbjct 2004466 AAGGCACGCAAAGTCCGTGTGCATGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGT 2004525 Query 120699 CAGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAA 120758 ||||||||||| | ||||| |||| | |||| |||| |||||| || || || Sbjct 2004526 GAGGCCGGGCATCAGTCCTTTGCTCTTCAGCCAGAAGATGGATGCAAAGGATCCAGAGAA 2004585 Query 120759 GAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCT 120818 ||| | ||| || ||| || || || || | || | ||| || ||| | |||| | Sbjct 2004586 GAAGATGCCTTCGACGGCTGCGAAAGCCACTAGTCGTTGGGCAAAGCTCGAC-TCTT--T 2004642 Query 120819 GTC---GATCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCAT 120866 ||| ||||| || ||||| || || || ||||| | ||| || || Sbjct 2004643 GTCTGATATCCATCGCAGAGCCCAGTCTGCTTTCTTGCGAATGCAAGGGAT 2004693 >seq7 Length=4110827 Score = 123 bits (136), Expect = 2e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||| ||||| || ||||| ||| || ||| ||| ||||| |||||||| Sbjct 1063382 GGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCTTCGAGTTGCTTGCC 1063441 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || ||||||||||| || |||||||| |||||||| |||||| || Sbjct 1063442 GGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGATTT 1063501 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||||| ||| ||| || || | |||| ||| ||||| || || || Sbjct 1063502 GACATTGTCGATCGTGTCGCTGGACTCGACCTCAAGCGTGATGGTCTTGCCAGTAAGTGT 1063561 Query 133643 TTTTACGAAAATCTGCATGGC 133663 || ||||| || |||||||| Sbjct 1063562 CTTCACGAAGATTTGCATGGC 1063582 Score = 122 bits (134), Expect = 8e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 133469 CTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCCGCGTA 133528 ||| ||||| || ||||| |||| | || | |||||| | ||||||||||||| | Sbjct 1062932 CTCCTTCTGGATGTTGTAGTCGCTGAGAGTCCGCCCGTCCTCCAACTGCTTGCCCGCGAA 1062991 Query 133529 AATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTG 133588 ||| |||||||||||||| ||||| ||||| |||||||| |||||| ||||| | Sbjct 1062992 AATCAGCCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTT 1063051 Query 133589 CTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTAC 133648 || | |||||| | | |||||| || | || | || ||||| || || || ||||| Sbjct 1063052 GTCGATCGTGTCTGAGCTCTCCACCTCCAGCGTAATCGTCTTGCCAGTAAGTGTCTTTAC 1063111 Query 133649 GAAAATCTGCAT 133660 ||| || ||||| Sbjct 1063112 GAAGATTTGCAT 1063123 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || || || ||||| || ||||| || | |||| |||||| |||||||||||| Sbjct 1063155 GTCGATTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCCAGCTGCTTGCCC 1063214 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || || |||||||||||||| ||||| ||||||||||| |||||| |||| Sbjct 1063215 GCAAAGATCAGGCGCTGCTGGTCGGGCGGGATCCCTTCCTTGTCCTGGATCTTGCTCTTG 1063274 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | ||||||| | | || || || | |||| || ||||| || || || Sbjct 1063275 ACGTTGTCGATCGTGTCGCTCGATTCAACCTCCAGCGTGATCGTCTTGCCAGTAAGTGTC 1063334 Query 133644 TTTACGAAAATCTGCATG 133661 |||||||| || |||||| Sbjct 1063335 TTTACGAAGATTTGCATG 1063352 >seq6 Length=4175021 Score = 105 bits (116), Expect = 6e-18 Identities = 133/180 (74%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 133473 TTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGTAAAT 133531 ||||| || ||||| |||| || || | | | || || || |||||||| ||| | || Sbjct 1383148 TTCTGGATGTTGTAGTCGCTCAGAGTTCGGCCA-TCTTCAAGTTGCTTGCCGGCGAAGAT 1383090 Query 133532 GAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTC 133591 | |||||||||||||| ||||||||||||||||| |||||| ||||| | || Sbjct 1383089 CAATCGCTGCTGGTCGGGCGGGATGCCTTCCTTGTCTTGGATCTTGGACTTGACGTTGTC 1383030 Query 133592 AACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAA 133651 | |||||||| | ||| || || | ||||| ||| ||||| || || || || ||||| Sbjct 1383029 GATCGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 1382970 >seq5 Length=4609732 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || || || ||||| || ||||| ||| | | ||| |||||| |||||||||||| Sbjct 1365006 GTCGATTCCTTCTGGATGTTGTAGTCGGACCTGGTGCGGCCGTCCTCCAGCTGCTTGCCC 1365065 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || || ||||||||||||| | ||| ||||||||||| ||||| |||| Sbjct 1365066 GCAAAGATCAGGCGCTGCTGGTCGGATGTGATCCCTTCCTTGTCCTAAATCTTGCTCTTG 1365125 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | | | |||||| | | ||| || || | |||| || ||| | || || || Sbjct 1365126 ATGTTGTTGATTGTGTCGCTCGACTCAACCTCCAGCGTGATCGTCTTGACAGTAAGTGTC 1365185 Query 133644 TTTACGAAAATCTGCATG 133661 || | ||||||||||||| Sbjct 1365186 TTCATGAAAATCTGCATG 1365203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483419126155480