Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000835495.1_202015-02- 23] 277 sequences; 43,029,152 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq2 120 4e-21 seq1 91.5 2e-12 >seq2 Length=7068955 Score = 120 bits (132), Expect = 4e-21 Identities = 200/289 (69%), Gaps = 0/289 (0%) Strand=Plus/Minus Query 259894 CATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCG 259953 |||||| ||| ||| || ||| || ||||||| || || || ||||| || || | Sbjct 2067974 CATGTCCCAGAAGTGCTTTACCCACGCTTCGCCCACCCTTTTCAACGCCGGAACCCCTCA 2067915 Query 259954 CCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTA 260013 || || || || || || || | |||||||| | || |||||||| || || Sbjct 2067914 ACCTCAACTGTCCTCCTGTTTCTTGATTGACATGAAAGAAGACAGCATCGAGGGAATATA 2067855 Query 260014 TGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGC 260073 |||||| |||||| || || | ||||||||| | || || || || ||| | || Sbjct 2067854 TGACACCCTCAAGACTTGTGCCATGATCTCCAAGACAGCTGGAGGTATTGGTCTCAATGC 2067795 Query 260074 ACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCT 260133 || | || ||| | || ||||| | || |||||||| ||| |||||||| || Sbjct 2067794 CCATTGCATTCGTGCCACAGGATCCTACATTGCAGGCACCAATGGCACCTCCAACGGGCT 2067735 Query 260134 TGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 | | |||||||||||||| || || | || || ||||||||||| ||| Sbjct 2067734 TATCCCCATGCTTCGCGTCTTCAATAATACTGCTCGCTACGTCGATCAG 2067686 >seq1 Length=8230860 Score = 91.5 bits (100), Expect = 2e-12 Identities = 213/306 (70%), Gaps = 18/306 (6%) Strand=Plus/Minus Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 || || || |||||||| |||| ||| || || || |||||||| || |||||||| Sbjct 2004789 ATGGAGAATATCCACTCGGAAATGTACAGCCTTCTCATTGACACCTATGTAAAGGACCCC 2004730 Query 1456072 GTCGAGAAGGACCACCTCT-TTCG-CGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGG 1456129 |||||| || ||| |||| |||||||||||| | || | | | || || | Sbjct 2004729 AAAGAGAAGA--CATATCTGTTCGACGCCATCGACACAATCCCTTGCATTCGCAAGAAAG 2004672 Query 1456130 CCGACTGGGCGATGAAGTGG--ATCA-ACAAGGAGGGCCTCGACACTTTGCCGAGCGGCT 1456186 | |||||||| || ||| |||| |||| ||| |||| ||||||| | || || Sbjct 2004671 CAGACTGGGCTCTGCGATGGATATCAGACAAAGAG----TCGA-GCTTTGCCCAACGACT 2004617 Query 1456187 CGTCGGCTTT-GCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGC-GCCATCTTT 1456243 || |||||| || | |||||| |||||||| ||||| || | | ||| ||||||| Sbjct 2004616 AGT-GGCTTTCGCAGCCGTCGAAGGCATCTTCTTCTCTGG-ATCCTTTGCATCCATCTTC 2004559 Query 1456244 TGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCG 1456303 ||||| |||| || || |||||||| | || ||| |||||| | ||| ||| Sbjct 2004558 TGGCTGAAGAGCAAAGGACTGATGCCCGG-CCTCACCTTCTCCAACGAGCTCATCTCTCG 2004500 Query 1456304 CGACGA 1456309 ||||| Sbjct 2004499 TGACGA 2004494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177784482840874