Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000835495.1_202015-02- 23] 277 sequences; 43,029,152 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq7 149 6e-31 seq5 118 1e-21 seq6 82.4 7e-11 >seq7 Length=4110827 Score = 149 bits (164), Expect = 6e-31 Identities = 174/231 (75%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || ||||| | |||| |||||| || ||||| |||||||| || |||||||| ||| Sbjct 1062897 CCGCCACGCAGTCTCAGCACCAAGTGCAACGTGCTCTCCTTCTGGATGTTGTAGTCGCTG 1062956 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || ||| |||| |||| |||||| ||||| || |||| |||||||||||||| |||| Sbjct 1062957 AGAGTCCGCCCGTCCTCCAACTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGAGGA 1063016 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTC---GCTCGATTC 35685 | || |||||||||| |||||| ||| | |||| | | |||||| |||| || Sbjct 1063017 ATGCCCTCCTTGTCCTGGATCTTCGACTTGA-CGTTGTCGATCGTGTCTGAGCTC---TC 1063072 Query 35686 CACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||||||| ||| ||||| || || || | || || || || || ||||| Sbjct 1063073 CACCTCCAGCGTAATCGTCTTGCCAGTAAGTGTCTTTACGAAGATTTGCAT 1063123 Score = 123 bits (136), Expect = 2e-23 Identities = 144/192 (75%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| || | | || || |||| ||||||||||| |||||||| Sbjct 1063161 TCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAG 1063220 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| ||||||||||| | || | | ||||||||| |||||| ||| | ||| Sbjct 1063221 ATCAGGCGCTGCTGGTCGGGCGGGATCCCTTCCTTGTCCTGGATCTTGCTCTTGA-CGTT 1063279 Query 35666 G-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||||||||||||| ||||||| ||||||||| || || || | || || || Sbjct 1063280 GTCGATCGTGTCGCTCGATTCAACCTCCAGCGTGATCGTCTTGCCAGTAAGTGTCTTTAC 1063339 Query 35725 AAATATCTGCAT 35736 || || ||||| Sbjct 1063340 GAAGATTTGCAT 1063351 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| || ||| || |||| || || ||||| || || || Sbjct 1063388 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCTTCGAGTTGCTTGCCGGCGAA 1063447 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||||| || | || |||||||||| |||||| || | | | Sbjct 1063448 GATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGATTTGACATT 1063507 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||||||| || || ||||| | |||||| || || || || | || ||||| Sbjct 1063508 GTCGATCGTGTCGCTGGACTCGACCTCAAGCGTGATGGTCTTGCCAGTAAGTGTCTTCAC 1063567 Query 35725 AAATATCTGCAT 35736 || || ||||| Sbjct 1063568 GAAGATTTGCAT 1063579 >seq5 Length=4609732 Score = 118 bits (130), Expect = 1e-21 Identities = 145/193 (75%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| |||| | ||| || |||| ||||||||||| |||||||| Sbjct 1365012 TCCTTCTGGATGTTGTAGTCGGACCTGGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAG 1365071 Query 35606 ATCAACCGCTGCTGGTCCGAAG-GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||| || | || | || ||||||||| ||||| ||| | || Sbjct 1365072 ATCAGGCGCTGCTGGTCGGATGTGATCCCT-TCCTTGTCCTAAATCTTGCTCTTGA-TGT 1365129 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | ||||||||||| || ||||||| ||||||||| || | || | || |||| Sbjct 1365130 TGTTGATTGTGTCGCTCGACTCAACCTCCAGCGTGATCGTCTTGACAGTAAGTGTCTTCA 1365189 Query 35724 CAAATATCTGCAT 35736 || |||||||| Sbjct 1365190 TGAAAATCTGCAT 1365202 >seq6 Length=4175021 Score = 82.4 bits (90), Expect = 7e-11 Identities = 120/167 (72%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 |||| || |||||||| ||| || ||||| | || || || ||||| || || || | Sbjct 1383150 CCTTCTGGATGTTGTAGTCGCTCAGAGTTCGGCCATCTTCAAGTTGCTTGCCGGCGAAGA 1383091 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666 |||| ||||||||||| | || | || |||||||| |||||| ||| | |||| Sbjct 1383090 TCAATCGCTGCTGGTCGGGCGGGATGCCTTCCTTGTCTTGGATCTTGGACTTGA-CGTTG 1383032 Query 35667 -CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712 | | ||||||| ||| || ||||| | ||||| || || ||||| Sbjct 1383031 TCGATCGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCCGT 1382985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450792039127160