Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000835495.1_202015-02- 23] 277 sequences; 43,029,152 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq2 132 5e-26 seq7 125 7e-24 seq6 102 8e-17 seq5 95.1 1e-14 seq4 84.2 2e-11 >seq2 Length=7068955 Score = 132 bits (146), Expect = 5e-26 Identities = 286/422 (68%), Gaps = 7/422 (2%) Strand=Plus/Minus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 ||||||||||| |||| ||||| ||||| |||||| |||| || ||||| ||| | Sbjct 2068048 CAACACATGCTTATGCGTGTGGCAGTGGGTATTCACAGCGACGATATTGAAAAGGCCATC 2067989 Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683 || |||||| | | ||||| ||| ||||| ||||||||||||||| | || | Sbjct 2067988 GAGACGTACAATCTCATGTCCCAGAAGTGCTTTACCCACGCTTCGCCCACCCTTTTCAAC 2067929 Query 7684 GCGGGCACAAACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGC 7743 || || || |||||| ||||||| ||||| ||| | |||| ||||||||| Sbjct 2067928 GCCGGAACCCCTCAACCTCAACTGTCCTCCTGTTTCTTGATTGACATGAAAGAAGACAGC 2067869 Query 7744 ATCGACGGCATTTACAACACGCTGCGCGA-TTGCGCCAATATTTCCAAATACGGC-GGCG 7801 ||||| || || || |||| || | || ||| |||| || ||| || || || || | Sbjct 2067868 ATCGAGGGAATATATGACACCCT-CAAGACTTGTGCCATGATCTCC-AAGACAGCTGGAG 2067811 Query 7802 GAATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACG 7861 | || ||||| || | | | | || |||| || | ||| | |||||| | Sbjct 2067810 GTATTGGTCTCAATGCCCATTGCATTCGTGCCACAGGATCCTACATTGCAGGCACCAATG 2067751 Query 7862 GAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAG 7921 | | ||| ||| | |||||| | ||||| |||||||| | | || | || | Sbjct 2067750 GCACCTCCAACGGGCTTATCCCCATGCTTCGCGTCTTCAATAATACTGCTCGCTACGTCG 2067691 Query 7922 ACCAGGGGGG---AAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGG 7978 | ||||| || |||||| ||| || ||||||||| | ||||| |||||||| | Sbjct 2067690 ATCAGGGTGGCAATAAGCGCCCAGGTGCTTTTGCCATCTACCTCGAGCCATGGCACGCAG 2067631 Query 7979 AC 7980 || Sbjct 2067630 AC 2067629 Score = 116 bits (128), Expect = 4e-21 Identities = 156/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 8712 GGGCACGTACGAATCGTACGCGGGCAGCCCTGCCAGCCGC--GGAATATTGCAATACGAC 8769 ||| || || ||| | |||| |||||||| | | ||| || || | ||||||||| Sbjct 2066897 GGGAACATATGAAACATACGAAGGCAGCCCAGT--GTCGCAAGGCATTCTTCAATACGAC 2066840 Query 8770 ATGTGGAATGTCACGCCCACCTCTTTGTGGAATTGGAGCGATTTGAAACGCAAAATTGCT 8829 |||||||||||||| ||| | |||||| ||||| || |||||| | | ||||| Sbjct 2066839 ATGTGGAATGTCACTCCCTCAGACTTGTGGGATTGGGACGCCTTGAAAGCCGAGATTGCC 2066780 Query 8830 CAATTCGGTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACGACTGCTCAA 8889 || ||| | ||||| || || | || ||| ||||||||| ||| ||||| ||||| Sbjct 2066779 AAACATGGTATTCGCAACTCTCTCCTTGTTGCTCCCATGCCCACTGCCTCGACTTCTCAA 2066720 Query 8890 ATAATGGGAAACAACGAATCCTTTGAGCCGTTCAC 8924 || | || |||||||||| ||| || |||| ||| Sbjct 2066719 ATCCTCGGCAACAACGAATGCTTCGAACCGTACAC 2066685 >seq7 Length=4110827 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | |||||| || ||||| |||||||| || ||||||||||| Sbjct 1063125 CCGCCGCGGAGCCGGAGCACGAGATGGAGCGTCGATTCCTTCTGGATGTTGTAGTCCGAG 1063184 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| || ||||| ||||| ||||| |||| |||||||| |||||||| Sbjct 1063185 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGCGGG 1063244 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || || || || || ||||| ||| | |||||| |||||| || Sbjct 1063245 ATCCCTTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATCGTGTCGCTCGATTCAACC 1063304 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || || || || | || || ||||| |||||||| Sbjct 1063305 TCCAGCGTGATCGTCTTGCCAGTAAGTGTCTTTACGAAGATTTGCAT 1063351 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || ||||| || || || ||||| || |||||||||||| Sbjct 1063353 CCGCCACGGAGACGGAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 1063412 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| ||||| || ||||| || || |||| |||||||| || || || Sbjct 1063413 AGGGTGCGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGG 1063472 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || |||||| ||| | |||||| || || || Sbjct 1063473 ATGCCCTCCTTGTCCTGGATCTTGGATTTGACATTGTCGATCGTGTCGCTGGACTCGACC 1063532 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || | || || ||||| |||||||| Sbjct 1063533 TCAAGCGTGATGGTCTTGCCAGTAAGTGTCTTCACGAAGATTTGCAT 1063579 Score = 96.9 bits (106), Expect = 4e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 |||| || ||| | ||| | |||| ||||| || ||||||||||||| | || | Sbjct 1062906 AGTCTCAGCACCAAGTGCAACGTGCTCTCCTTCTGGATGTTGTAGTCGCTGAGAGTCCGC 1062965 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || | ||| ||||| || ||||||| |||||||| || || || ||||| || Sbjct 1062966 CCGTCCTCCAACTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGAGGAATGCCCTCC 1063025 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || ||||| ||| | ||||| || ||||| || || ||| Sbjct 1063026 TTGTCCTGGATCTTCGACTTGACGTTGTCGATCGTGTCTGAGCTCTCCACCTCCAGCGTA 1063085 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || | || || ||||| |||||||| Sbjct 1063086 ATCGTCTTGCCAGTAAGTGTCTTTACGAAGATTTGCAT 1063123 >seq6 Length=4175021 Score = 102 bits (112), Expect = 8e-17 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583 |||| || ||||||||||||| | || | || || || || ||||| || || | Sbjct 1383150 CCTTCTGGATGTTGTAGTCGCTCAGAGTTCGGCCATCTTCAAGTTGCTTGCCGGCGAAGA 1383091 Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643 |||| |||||||| |||||||| |||||||| || ||||| || || ||||| || Sbjct 1383090 TCAATCGCTGCTGGTCGGGCGGGATGCCTTCCTTGTCTTGGATCTTGGACTTGACGTTGT 1383031 Query 134644 CCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703 | | ||||||||||| || || || || || ||||| || || || | || || |||| Sbjct 1383030 CGATCGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 1382971 Query 134704 A 134704 | Sbjct 1382970 A 1382970 >seq5 Length=4609732 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 134504 CACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTC 134563 |||||| || ||||| |||||||| || |||||||||||| |||| | ||| || Sbjct 1364993 CACGAGATGGAGCGTCGATTCCTTCTGGATGTTGTAGTCGGACCTGGTGCGGCCGTCCTC 1365052 Query 134564 GAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTG 134623 ||||| ||||| ||||| |||| |||||||| |||| | || ||||| || || | Sbjct 1365053 CAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGATGTGATCCCTTCCTTGTCCTA 1365112 Query 134624 AATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTT 134683 ||| || |||| || | ||||||| ||| || || || || || || || || Sbjct 1365113 AATCTTGCTCTTGATGTTGTTGATTGTGTCGCTCGACTCAACCTCCAGCGTGATCGTCTT 1365172 Query 134684 ACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || | || || | |||||| ||||| Sbjct 1365173 GACAGTAAGTGTCTTCATGAAAATCTGCAT 1365202 >seq4 Length=6030834 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || ||||| || ||||| || || |||||||| || |||||||||||| | ||| | Sbjct 3720702 AGACGCAAGACCAGGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGG 3720643 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| ||||| || ||||| || || |||| || ||||| || || || |||||||| Sbjct 3720642 CCGTCTTCGAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGGTCCGGGGGAATGCCTTCC 3720583 Query 134616 TTTTCT 134621 || ||| Sbjct 3720582 TTGTCT 3720577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505396650058040