Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000835495.1_202015-02- 23] 277 sequences; 43,029,152 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1 109 4e-19 >seq1 Length=8230860 Score = 109 bits (120), Expect = 4e-19 Identities = 231/338 (68%), Gaps = 9/338 (3%) Strand=Plus/Minus Query 43950 GGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGT 44009 |||||||| | || || ||||| || |||||||||||||| ||||| || || || | Sbjct 2004803 GGTTTCAAGTCATGATGGAGAATATCCACTCGGAAATGTACAGCCTTCTCATTGACACCT 2004744 Query 44010 ACATCAAAGATGGGCACGAGAAG-CATCGAT-TGTTTAATGCGATAGAAACAGTACCTGC 44067 | | || || | |||||| ||| || |||| | || || || ||| | ||| Sbjct 2004743 ATGTAAAGGACCCCAAAGAGAAGACAT--ATCTGTTCGACGCCATCGACACAATCCCTTG 2004686 Query 44068 GATTAAACATAAAGCAGACTGGGCCCTTAAATGGATA-AATTCAAATGATTC---TTTTG 44123 ||| | |||||||||||||| || ||||||| | |||| || || |||| Sbjct 2004685 CATTCGCAAGAAAGCAGACTGGGCTCTGCGATGGATATCAGACAAA-GAGTCGAGCTTTG 2004627 Query 44124 GAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGG 44183 ||||||| || || || |||| || |||||||| ||||| || ||||| ||||| Sbjct 2004626 CCCAACGACTAGTGGCTTTCGCAGCCGTCGAAGGCATCTTCTTCTCTGGATCCTTTGCAT 2004567 Query 44184 CCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAA 44243 |||| || ||| | |||| ||| ||||||| || | || || || || ||| | | Sbjct 2004566 CCATCTTCTGGCTGAAGAGCAAAGGACTGATGCCCGGCCTCACCTTCTCCAACGAGCTCA 2004507 Query 44244 TAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGC 44281 | |||||| || ||| | || || ||||| ||| Sbjct 2004506 TCTCTCGTGACGAGGGCATGCACACGGACTTTGCGTGC 2004469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397454658213385