Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000835495.1_202015-02- 23] 277 sequences; 43,029,152 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq2 297 2e-75 seq1 109 6e-19 >seq2 Length=7068955 Score = 297 bits (328), Expect = 2e-75 Identities = 923/1417 (65%), Gaps = 30/1417 (2%) Strand=Plus/Plus Query 78507 GAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGCCTC 78566 |||||| ||||| ||| ||||| |||||| || | |||||||| ||||| || Sbjct 2066645 GAACTCACCGGCAAGGACACGGCGAGAGTAGATATTAGATGTGTACGGTTCGAAGCATTC 2066704 Query 78567 GTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGAGAATT 78626 |||||| || | ||| || | |||||||| || |||||||| || || || ||||| || Sbjct 2066705 GTTGTTGCCGAGGATTTGAGAAGTCGAGGCAGTGGGCATGGGAGCAACAAGGAGAGAGTT 2066764 Query 78627 CCGAAGACCATGCGTCTTGATCTCGACCTTTAGGCCGTCCCAA------AATTCATTCGC 78680 |||| |||||| | |||||| | || | | |||||||| || || | Sbjct 2066765 GCGAATACCATGTTTGGCAATCTCGGCTTTCAAGGCGTCCCAATCCCACAAGTCTGAGGG 2066824 Query 78681 CGCGATCCCCCACATGTCCGGTTGAAGGATACCCTCGGACGCCGGCGACCCCTTGAACGT 78740 | || ||||||||| |||||| || || | ||| | || || | | | || Sbjct 2066825 AGTGACATTCCACATGTCGTATTGAAGAATGCCTTGCGACACTGGGCTGCCTTCGTATGT 2066884 Query 78741 CTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCATGACTCGAGCAGGGCCGCGTGGTACAC 78800 || || | ||||| |||||| || ||||| || || | || || || ||||| | Sbjct 2066885 TTCATATGTTCCCTGCTCCTTTGCCAGTTCACAAGAAGCAGTGAGAGCAGCATGGTAGAT 2066944 Query 78801 AGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCTTGGTCTCGTCGAACGAAAGGCCGAG 78860 | ||||||||| | || | | | |||| || |||||| | ||| | || Sbjct 2066945 GGTCTCGAAGATTTGGATATTCAATTGCCTGGCCTCGGGAGAGTCGAAAGGAAGACGCAG 2067004 Query 78861 CATCATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTT 78920 | | |||| | ||||| || || || || |||| | ||| |||||||| || | ||| Sbjct 2067005 CGCAAGGAAGGCGTCGGCGAGACCTTGAACTCCGAGACCGACGGGTCGGTGTCGGAAGTT 2067064 Query 78921 GCTCTTTCGGGCCGCCTC--GGTC-GGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTT 78977 |||||| ||| || || | ||||| |||| |||||| | ||| ||||| Sbjct 2067065 GCTCTTCTT---CGCTTCAGGGACAGGGTAGTAGTTGATATCGATAATCTTGTTTAGGTT 2067121 Query 78978 ACGCGTGACGACCCGAGTCACCTCGTACAATTTGGCGAAATCAAAATGATTTC---CTTT 79034 || || || ||| |||| ||||| | | |||| ||| | | | || ||| Sbjct 2067122 GCGAGTCACAACCTGAGTGACCTCATGAAGACGACCGAAGTCATATTCACCTCGAGCTTG 2067181 Query 79035 G---ATGAAAGTCGGTAGGCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCT 79091 | | ||| ||||| || ||| || ||||| |||||||| || ||| || || Sbjct 2067182 GTCGACGAATGTCGGGAGAGCCAGGGAGGCCAGATTGCACACAGCGACCTCATCGGGAGC 2067241 Query 79092 AGAAACCTCGATGATTTCTGTGCACAAATTAGACGACTT--GATGGTGCCGATGTTCTTC 79149 | |||| || || ||||| | ||| || ||| |||||| || | ||||||| Sbjct 2067242 CGTGTATTCGACAATCTCAGTGCAAAGATTGGAG--CTTCGGATGGTCCCCAAGTTCTTC 2067299 Query 79150 TGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACC 79209 ||||||||||| || ||||||||||||||| ||| || |||||||| || || | Sbjct 2067300 TGGTTGCTCTTTCTATTGCAGGCGTCCTTGTAGAGCATATAGGGCGTCCCAGTTTCGGTC 2067359 Query 79210 TGACTCTTGAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGT-ACC--GA 79266 || || ||| | | | ||| | | | | ||| ||| ||| | ||| | Sbjct 2067360 TGTGCCTCGAGGATAGCATACCATAGTTTCTGAGCCTTTACAG---TCTGGCGACCACGG 2067416 Query 79267 CCCTGTGCGACGTACGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGG 79326 |||| | || || ||| | ||||||| | || |||||||| |||| ||| Sbjct 2067417 CCCTCCTTCTCATATCTCTCGTATAGAGCGTTGAACTCGTCACCATAGACGTCGGCAAGG 2067476 Query 79327 CCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATG 79386 || || ||| || || || | || ||| || | || |||||| || |||||| Sbjct 2067477 CCAGGTGCCTCATGAGGACAGAAGAGAGTCCATTCTTGGTTCTTCTCGACACGTTCCATG 2067536 Query 79387 AAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCC 79446 || | ||| || |||||| ||| ||| | |||||| | | ||| || | ||| Sbjct 2067537 AACAAGTCAGGAGTCCACATGGCGTAGAACAAGTCGCGTGCTCTAACCTCTTCCTTGCCG 2067596 Query 79447 TGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATG 79506 |||||| | ||| | | |||||| | | ||| |||||||| ||||| || |||||| Sbjct 2067597 TGGTTCTTTCTCAGGTTCAAAAAGTCGAACACGTCTGCGTGCCATGGCTCGAGGTAGATG 2067656 Query 79507 GCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAA 79566 || || | ||| |||||| ||| ||||| | |||||| || || || || ||||| Sbjct 2067657 GCAAAAGCACCTGGGCGCTTATTGCCACCCTGATCGACGTAGCGAGCAGTATTATTGAAG 2067716 Query 79567 ACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCG 79626 || || |||||||| | | |||| || | ||| || || || || | || Sbjct 2067717 ACGCGAAGCATGGGGATAAGCCCGTTGGAGGTGCCATTGGTGCCTGCAATGTAGGATCCT 2067776 Query 79627 CTCGCCCGAATGTTC-GAGCAGTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGC 79685 | || |||||| | ||| || | || || || || | ||||||||| || Sbjct 2067777 GTGGCACGAATGCAATGGGCATTG-AGACCAATACCTCCAGCTGTCTTGGAGATCATGGC 2067835 Query 79686 GCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAA 79745 || |||||| || || || || |||||||| ||| || ||||| | | || ||| Sbjct 2067836 ACAAGTCTTGAGGGTGTCATATATTCCCTCGATGCTGTCTTCTTTCATGTCAATCAAGAA 2067895 Query 79746 GCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGT 79805 ||| |||| || || | || ||||||||||| ||||| |||| ||||| || Sbjct 2067896 ACAGGAGGACAGTTGAGGTTGAGGGGTTCCGGCGTTGAAAAGGGTGGGCGAAGCGTGGGT 2067955 Query 79806 GAAGAACTTTTGGCTCATCAGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTG 79865 ||| |||| ||| ||| |||| ||||||||| || | | ||||||| ||| Sbjct 2067956 AAAGCACTTCTGGGACATGAGATTGTACGTCTCGATGGCCTTTTCAATATCGTCGCTGTG 2068015 Query 79866 GATGCCGACCGCGACGCGCATGAAGAGGTACTGGGGC 79902 || || || || || ||||| | | || |||||| Sbjct 2068016 AATACCCACTGCCACACGCATAAGCATGTGTTGGGGC 2068052 Score = 239 bits (264), Expect = 5e-58 Identities = 1090/1700 (64%), Gaps = 85/1700 (5%) Strand=Plus/Minus Query 19165 CGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAA 19224 |||||| ||| | || ||| |||||||| ||| || ||||| |||| ||||||||||| Sbjct 2067989 CGAGACGTACAATCTCATGTCCCAGAAGTGCTTTACCCACGCTTCGCCCACCCTTTTCAA 2067930 Query 19225 CGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAG 19284 |||||| || | || || |||| ||||||| | | | ||||| || ||||| Sbjct 2067929 CGCCGGAACCCCTCAACCTCAACTGTCCTCCTGTTTCTTGATTGACATGAAAGAAGACAG 2067870 Query 19285 CATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGG 19344 ||| ||||| || || || || |||||| || || ||||||||| | || || Sbjct 2067869 CATCGAGGGAATATATGACACCCTCAAGACTTGTGCCATGATCTCCAAGACAGCTGGAGG 2067810 Query 19345 TATCGGGATCCACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAAT------GGGAC 19398 ||| || || | ||| | || | | ||| || ||| || | | || || Sbjct 2067809 TATTGGTCTCAA-TGCCC--AT-TGCATTCG--TGCCACAGGATCCTACATTGCAGGCAC 2067756 Query 19399 GAACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTA 19458 || || || |||| | |||| ||||| ||||||||||| || || || | || Sbjct 2067755 CAATGGCACCTCCAACGGGCTTATCCCCATGCTTCGCGTCTTCAATAATACTGCTCGCTA 2067696 Query 19459 CGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCA 19518 |||| | ||||| ||| || ||| || | || ||||||||||||||||||||||| Sbjct 2067695 CGTCGATCAGGGTGGCAATAAGCGCCCAGGTGCTTTTGCCATCTACCTCGAGCCATGGCA 2067636 Query 19519 CGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTG 19578 ||| ||||| | || || | | ||| | |||||| || | || ||| | | Sbjct 2067635 CGCAGACGTGTTCGACTTTTTGAACCTGAGAAAGAACCACGGCAAGGAAGAGGTTAGAGC 2067576 Query 19579 TCGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGA 19638 |||||| | ||| ||| |||||| ||| ||| | |||||||| || |||||| | Sbjct 2067575 ACGCGACTTGTTCTACGCCATGTGGACTCCTGACTTGTTCATGGAACGTGTCGAGAAGAA 2067516 Query 19639 CGAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGA 19698 | |||||||| || | || || || || |||||||| |||||||||| || || Sbjct 2067515 CCAAGAATGGACTCTCTTCTGTCCTCATGAGGCACCTGGCCTTGCCGACGTCTATGGTGA 2067456 Query 19699 GGCGTTCAATGAGTTGTACCGGACTTACGTAGCCCAGGGCCG-GTTCAAGAAGGTGGTCC 19757 | |||||| | | ||| || || | ||||||| | || || || Sbjct 2067455 CGAGTTCAACGCTCTATACGAGAGATATGAGAAGGAGGGCCGTGGTC-GCCAGACTGTAA 2067397 Query 19758 GGGCCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACA 19817 ||| | | | | ||| | ||||| | ||| ||| || || || || || | Sbjct 2067396 AGGCTCAGAAACTATGGTATGCTATCCTCGAGGCACAGACCGAAACTGGGACGCCCTATA 2067337 Query 19818 TGTGCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATC--AA 19875 || ||||||||||||| || ||| || ||||||||| | || | ||| || Sbjct 2067336 TGCTCTACAAGGACGCCTGCAATAGAAAGAGCAACCAGAAGAACTTGGGGACCATCCGAA 2067277 Query 19876 GTCGTCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAG---CCGGACGAGACTGCCGT 19932 | ||||| || || ||||| || | || | || | || || ||| || || Sbjct 2067276 G--CTCCAATCTTTGCACTGAGATTGTCGA---ATACACGGCTCCCGATGAGGTCGCTGT 2067222 Query 19933 GTGTAATCTGGCGTCCCTGTGCCTGCCGACTTTCGTCAAGGCCTCCTC-------CTTCG 19985 ||| |||||||| |||||| || ||||| |||||| | | ||| | | Sbjct 2067221 GTGCAATCTGGCCTCCCTGGCTCTCCCGACATTCGTCGA-CCAAGCTCGAGGTGAATATG 2067163 Query 19986 ACTTTGCCAAATTGTACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCG 20045 |||| | | | ||||| || | ||| || || || || || || | |||| Sbjct 2067162 ACTTCGGTCGTCTTCATGAGGTCACTCAGGTTGTGACTCGCAACCTAAACAAGATTATCG 2067103 Query 20046 ATCGGAACTTTTACCC-GACC--GAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGA 20102 || |||| ||||| | || || ||| | ||| || | || ||||| || Sbjct 2067102 ATATCAACTACTACCCTGTCCCTGAAGCGAAG---AAGAGCAACTTCCGACACCGACCCG 2067046 Query 20103 TCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCT--CATTCGA 20160 ||| |||| || || || || ||||||| ||| | ||| | || ||| | ||||| Sbjct 2067045 TCGGTCTCGGAGTTCAAGGTCTCGCCGACGCCTTCCT--TGCGCTGCGTCTTCCTTTCGA 2066988 Query 20161 CGATCCCAAGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCT 20220 | |||| |||| | | | || | ||||||||| || | ||||| || || || Sbjct 2066987 CTCTCCCGAGGCCAGGCAATTGAATATCCAAATCTTCGAGACCATCTACCATGCTGCTCT 2066928 Query 20221 CCTGGAATCGTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCC 20280 | | || || ||||| || || ||| | || | || || || | | | || || Sbjct 2066927 CACTGCTTCTTGTGAACTGGCAAAGGAGCAGGGAACATATGAAACATACGAAGGCAGCCC 2066868 Query 20281 CGCGTCCGAGGGTATCCTCCAGCCGGACATGTGGGGCGTCA----CTGAGA---ATGAGT 20333 | ||| | || || || || ||||||||| |||| || ||| || | Sbjct 2066867 AGTGTCGCAAGGCATTCTTCAATACGACATGTGGAATGTCACTCCCTCAGACTTGTGGGA 2066808 Query 20334 TTTGGAGCGCCCTCAAGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCG 20393 || ||| |||| | || | ||||| | || || |||||||||| | || || | Sbjct 2066807 TTGGGA-CGCCTTGAAAGCCGAGATTGCCAAACATGGTATTCGCAACTCTCTCCTTGTTG 2066749 Query 20394 CGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGT 20453 | |||||||| || |||||||| | || ||| | || |||||||| ||||| |||| Sbjct 2066748 CTCCCATGCCCACTGCCTCGACTTCTCAAATCCTCGGCAACAACGAATGCTTCGAACCGT 2066689 Query 20454 ACACGACCAACATCTACTTGCGTCGTACACTGGCCGGTGAGTTCGTCATGGTAAACAAGC 20513 |||| | || ||||||| || ||| || |||||||||||| || ||| ||| | Sbjct 2066688 ACACATCTAATATCTACTCTCGCCGTGTCCTTGCCGGTGAGTTC--CA-GGTTGTCAATC 2066632 Query 20514 ACCTGGTCCGCGACTTGCAGAA---GATCGATATG------TGGTCGCCCAAAATTAAGA 20564 ||||| | || || || | |||| || ||||| ||| || |||| Sbjct 2066631 -CCTGG-CTGC----TGAAGGATCTCGTCGACTTGGGCCTATGGTCCGACAATATGAAGA 2066578 Query 20565 ATGAAATTGTCCGAGCCGGCGGGAGCGTCCAGGCATTGGATATCCCCCA---------GA 20615 || || || |||| || || || | || | |||||| | | Sbjct 2066577 ATCGGATCATC---GCCGAAGGCGGC-TCGATCCA--AAACATCCCCAACGTTCCTGCGG 2066524 Query 20616 ACCTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACATGG 20675 || |||| | | |||| |||||||||||||||| ||| || | || | | |||| Sbjct 2066523 ACATCAAAGCTCTATACAAGACCGTATGGGAAATCAGCCAGCGGACCGTCCTGCAAATGG 2066464 Query 20676 CGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAGAATC 20735 | || || || || |||| ||| |||||||||||||| ||||| | | || || | | Sbjct 2066463 CAGCGGACCGTGGTGCCTTCATTGACCAGTCCCAGTCTCTCAACATTCACTTGAAGGAAC 2066404 Query 20736 CGAGCCTGGCGAAGCTGAGCTCCATGCA-TATGTACGGCTGGCACAAGGGGCTCAAGACG 20794 | | | ||| ||| | | |||||| | || | |||||| | | ||| |||||||| Sbjct 2066403 CAACCATGGGCAAGATCACGAGCATGCACTTTGCA-GGCTGGAAAATGGGTCTCAAGACC 2066345 Query 20795 GGCATGTACTATCTGCGGAC 20814 ||||||||||| ||||| || Sbjct 2066344 GGCATGTACTACCTGCGCAC 2066325 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249 || |||| ||||||||||| |||||||||||| | ||||| || | |||||| ||| Sbjct 2066325 GTGCGCAGGTAGTACATGCCGGTCTTGAGACCCATTTTCCAGCCTGCAAAGTGCATGCTC 2066384 Query 78250 GACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATG 78309 | | |||| ||| | || | || || | |||||||| |||||||||||||| ||| Sbjct 2066385 GTGATCTTGCCCATGGTTGGTTCCTTCAAGTGAATGTTGAGAGACTGGGACTGGTCAATG 2066444 Query 78310 TACGCACCGCGGTCGGCCGCCAT 78332 | ||||| ||||| || ||||| Sbjct 2066445 AAGGCACCACGGTCCGCTGCCAT 2066467 >seq1 Length=8230860 Score = 109 bits (120), Expect = 6e-19 Identities = 213/310 (69%), Gaps = 5/310 (2%) Strand=Plus/Minus Query 59825 TATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAA 59884 ||||||||| || | |||| || | || || | | || ||||| || ||||||| Sbjct 2004781 TATCCACTCGGAAATGTACAGCCTTCTCATTGACACCTATGTAAAGGACCCCAAAGAGAA 2004722 Query 59885 GGCTGGTCTGTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAAACAAAAAGCAGAATGGG 59943 | | ||||||| ||||| || || |||| ||| | | | |||||||| |||| Sbjct 2004721 GACATATCTGTTCGACGCCATCGACACAATCCCTTGCATTCGCA-AGAAAGCAGACTGGG 2004663 Query 59944 CCATGCAGTGGATG--AGTCCTGGAG-CATCATTTGCACAACGTCTCATAGCTTTTGCAT 60000 | ||| ||||| || | ||| | ||||| ||||| || | ||||| ||| Sbjct 2004662 CTCTGCGATGGATATCAGACAAAGAGTCGAGCTTTGCCCAACGACTAGTGGCTTTCGCAG 2004603 Query 60001 GCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTG 60060 ||| ||||| |||||||||||||| || || | || |||||||| || | | Sbjct 2004602 CCGTCGAAGGCATCTTCTTCTCTGGATCCTTTGCATCCATCTTCTGGCTGAAGAGCAAAG 2004543 Query 60061 GCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATC 60120 | || ||||| ||||| | |||||||||||||| || || || ||||||||| | || Sbjct 2004542 GACTGATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGCATGCACA 2004483 Query 60121 AGGAGTTTGC 60130 ||| ||||| Sbjct 2004482 CGGACTTTGC 2004473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548522900732880