Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000835495.1_202015-02- 23] 277 sequences; 43,029,152 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2 176 5e-39 seq6 145 8e-30 seq1 82.4 8e-11 >seq2 Length=7068955 Score = 176 bits (194), Expect = 5e-39 Identities = 461/698 (66%), Gaps = 4/698 (1%) Strand=Plus/Minus Query 53243 GAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAAC 53302 ||||||||| | | ||| ||| |||| |||||| ||||| |||| ||||| |||||| Sbjct 2067988 GAGACGTACAATCTCATGTCCCAGAAGTGCTTTACCCACGCTTCGCCCACCCTTTTCAAC 2067929 Query 53303 GCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCG 53362 || || || ||| ||||| |||| ||| ||| || | | ||||| || ||| Sbjct 2067928 GCCGGAACCCCTCAACCTCAACTGTCCTCCTGTTTCTTGATTGACATGAAAGAAGACAGC 2067869 Query 53363 ATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGT 53422 ||||| || || || || || |||||| |||||| ||||||||| | || ||| Sbjct 2067868 ATCGAGGGAATATATGACACCCTCAAGACTTGTGCCATGATCTCCAAGACAGCTGGAGGT 2067809 Query 53423 ATCGGTATCCACTGCTCGAA-CGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGG 53481 || ||| || | ||| | | | ||||| | || | || || || || || Sbjct 2067808 ATTGGTCTCAA-TGCCCATTGCATTCGTGCCACAGGATCCTACATTGCAGGCACCAATGG 2067750 Query 53482 CGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAA 53541 | | || | || | | || ||||| ||||||||||| || || || || |||||| | Sbjct 2067749 CACCTCCAACGGGCTTATCCCCATGCTTCGCGTCTTCAATAATACTGCTCGCTACGTCGA 2067690 Query 53542 CCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGA 53601 |||||||| |||||| || | || ||||||||||||||||| |||||||| || Sbjct 2067689 TCAGGGTGGCAATAAGCGCCCAGGTGCTTTTGCCATCTACCTCGAGCCATGGCACGCAGA 2067630 Query 53602 CATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGA 53661 | | | || ||| | | ||| | ||| || || | |||||| | | || || Sbjct 2067629 CGTGTTCGACTTTTTGAACCTGAGAAAGAACCACGGCAAGGAAGAGGTTAGAGCACGCGA 2067570 Query 53662 CCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGG 53720 | |||| ||| || |||||| ||| ||| | |||||| || || |||||| || | | Sbjct 2067569 CTTGTTCTAC-GCCATGTGGACTCCTGACTTGTTCATGGAACGTGTCGAGAAGAACCAAG 2067511 Query 53721 AGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGT 53780 | ||| || | || || | ||| || ||||| | ||||| ||||| |||| Sbjct 2067510 AATGGACTCTCTTCTGTCCTCATGAGGCACCTGGCCTTGCCGACGTCTATGGTGACGAGT 2067451 Query 53781 TTAACGAGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGC 53840 | |||| | || || || | ||||||| ||| || ||||| | Sbjct 2067450 TCAACGCTCTATACGAGAGATATGAGAAGGAGGGCCGTGGTCGCCAGACTGTAAAGGCTC 2067391 Query 53841 GTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCT 53900 | ||||| |||| |||||| || ||| || || || ||||| || ||| || Sbjct 2067390 AGAAACTATGGTATGCTATCCTCGAGGCACAGACCGAAACTGGGACGCCCTATATGCTCT 2067331 Query 53901 ACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938 ||||||| | ||| |||||||||||||||||| Sbjct 2067330 ACAAGGACGCCTGCAATAGAAAGAGCAACCAGAAGAAC 2067293 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/140 (74%), Gaps = 6/140 (4%) Strand=Plus/Minus Query 55787 GCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCT 55846 || || |||||||| | ||| ||||||||||||||||| ||||| | || || | || Sbjct 2066461 GCGGACCGTGGTGCCTTCATTGACCAGTCCCAGTCTCTCAACATTCACTTGAAGGAACCA 2066402 Query 55847 TCACTGGCCAAGTT---GAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACG 55903 | ||| |||| | |||| ||||||||| || ||||| | ||| |||||||| Sbjct 2066401 ACCATGGGCAAGATCACGAGC---ATGCACTTTGCAGGCTGGAAAATGGGTCTCAAGACC 2066345 Query 55904 GGTATGTACTATCTGCGGAC 55923 || |||||||| ||||| || Sbjct 2066344 GGCATGTACTACCTGCGCAC 2066325 >seq6 Length=4175021 Score = 145 bits (160), Expect = 8e-30 Identities = 216/304 (71%), Gaps = 2/304 (1%) Strand=Plus/Plus Query 117298 TAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACC 117357 ||| || ||||||||||| |||| |||||||| ||| |||| || || ||||| Sbjct 476858 TAGACGGGTGAAAATGTATCGAGCGCTTGCAGAATCGCTGCCGCCCTGGTTTCGGGTACC 476917 Query 117358 GAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAA 117417 ||||| || |||||||| | ||| | ||||| | || |||||| |||| |||| Sbjct 476918 AAATTGGCCTGAGGGCTCCAACAAGTTGACATTGTTCGATCCGACAAAGCTTTGGGCCAG 476977 Query 117418 GTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCAC 117477 | ||||||||| ||||| | ||||||||||||||||| ||| | | || Sbjct 476978 GCCGACAATCGTCTGCTGGAGAGATGTTTCACCATGGTGATACGCGGTCATACCACCGAC 477037 Query 117478 GTAGCCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATA 117537 | |||||||||| ||| |||||||| || |||| || ||||| ||| ||||| Sbjct 477038 CAAACCCGCCAGCTCAGCAACCTTCATATCCTTTTTCAGATTGCGCTTGAAGCATGCATA 477097 Query 117538 AATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGA-GGGATCGAACGCTTGA 117596 || || || ||||||| ||||| |||||||| | || ||| ||||| || || || Sbjct 477098 CATGACTTTTCGCTGACCAGGCTTTAGACCATCAACTAC-TGAGGGGATAGATCGGATGT 477156 Query 117597 TGTC 117600 |||| Sbjct 477157 TGTC 477160 Score = 86.0 bits (94), Expect = 7e-12 Identities = 189/282 (67%), Gaps = 1/282 (0%) Strand=Plus/Plus Query 152025 ACGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAA 152084 ||| ||||| |||||||| | ||| || | ||| |||| || || || ||||| Sbjct 476861 ACGGGTGAAAATGTATCGAGCGCTTGCAGAATCGCTGCCGCCCTGGTTTCGGGTACCAAA 476920 Query 152085 CTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATT 152144 || || |||||||| | | ||||| ||||| | || || || | || |||| Sbjct 476921 TTGGCCTGAGGGCTCCAACAAGTTGACATTGTTCGATCCGACAAAGCTTTGGGCCAGGCC 476980 Query 152145 CACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTA 152204 |||||||| ||| ||| | |||||| ||||||||||| ||| | ||| | Sbjct 476981 GACAATCGTCTGCTGGAGAGATGTTTCACCATGGTGATACGCGGTCATACCACCGACCAA 477040 Query 152205 TCCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAAT 152264 ||||||| || || |||||||| ||| | |||| || ||||| || || || || Sbjct 477041 ACCCGCCAGCTCAGCAACCTTCATATCCTTTTTCAGATTGCGCTTGAAGCATGCATACAT 477100 Query 152265 CACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGG 152306 || || ||||| || || | ||| || || || ||||| Sbjct 477101 GACTTTTCGCTGACCAGGCTTTAGACCATCAACTAC-TGAGG 477141 >seq1 Length=8230860 Score = 82.4 bits (90), Expect = 8e-11 Identities = 173/255 (68%), Gaps = 5/255 (2%) Strand=Plus/Plus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 ||||| ||||| ||||| |||||| ||| ||||||| ||||| ||| |||| Sbjct 2004527 AGGCCGGGCATCAGTCCTTTGCTCTTCAGCCAGAAGATGGATGCAAAGGATCCAGAGAAG 2004586 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA---CGGTGCATCGGAA 74921 |||||||||||||| || || || || || ||||| || || || | | | Sbjct 2004587 AAGATGCCTTCGACGGCTGCGAAAGCCACTAGTCGTTGGGCAAAGCTCGACTCTTTGTCT 2004646 Query 74922 GTCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGC-AGGGACAGTATCGATCGC 74980 | ||||| | ||||||| || || |||| | || || ||||| || ||||| || Sbjct 2004647 GATATCCATCGCAGAGCCCAGTCTGC-TTTCTTGCGAATGCAAGGGATTGTGTCGATGGC 2004705 Query 74981 TTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTA 75040 | ||| || || |||||||| ||| ||||| || ||||||| | ||| ||| Sbjct 2004706 GTCGAACAGATATGTCTTCTCTTTGGGGTCCTTTACATAGGTGTCAATGAGAAGGCTGTA 2004765 Query 75041 CGTCTCCGAATGAAT 75055 | | ||||| || || Sbjct 2004766 CATTTCCGAGTGGAT 2004780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547214105264600