Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000835495.1_202015-02- 23] 277 sequences; 43,029,152 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2 194 2e-44 seq7 152 6e-32 seq4 111 2e-19 seq6 105 8e-18 seq5 104 3e-17 >seq2 Length=7068955 Score = 194 bits (214), Expect = 2e-44 Identities = 678/1051 (65%), Gaps = 37/1051 (4%) Strand=Plus/Plus Query 80723 CGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCG-CTCG 80781 |||| || || || ||||| |||| ||| || ||||| || ||| | || || Sbjct 2067016 CGTCGGCGAGACCTTGAACTCCGAGACCGACGGGTCGGTGTCGGAAGTT-GCTCTTCTTC 2067074 Query 80782 GCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACC 80841 || || || | ||||| |||| ||||||| | ||| |||||||| || |||||| Sbjct 2067075 GCTTCAGGGACAGGGTAGTAGTTGATATCGATAATCTTGTTTAGGTTGCGAGTCACAACC 2067134 Query 80842 CGTGTAACATCATGAAGTTTCTGAAAGTCGAATTGGTTCCCCT---------TC-ACAAA 80891 | || || |||||||| ||||| ||| | ||| || || || Sbjct 2067135 TGAGTGACCTCATGAAGACGACCGAAGTCATATT----CACCTCGAGCTTGGTCGACGAA 2067190 Query 80892 TGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTC 80951 || ||| || |||||| |||||||||||||| || ||||| || | | | || | || Sbjct 2067191 TGTCGGGAGAGCCAGGGAGGCCAGATTGCACACAGCGACCTCATCGGGAGCCGTGTATTC 2067250 Query 80952 GACGATTTCCGTGCACAAATTAGAAGACTTA--ATTGTACCCAGGTTTTTCTGGTTTGAC 81009 ||| || || ||||| | ||| || ||| || || |||| ||| |||||||| | Sbjct 2067251 GACAATCTCAGTGCAAAGATTGGAG--CTTCGGATGGTCCCCAAGTTCTTCTGGTTGCTC 2067308 Query 81010 TTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTG 81069 || ||||| |||||||||||| ||| || || || || || ||| ||||| || | Sbjct 2067309 TTTCTATTGCAGGCGTCCTTGTAGAGCATATAGGGCGTCCCAGTTTCGGTCTGTGCCTCG 2067368 Query 81070 AGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACA 81129 ||||| || | ||| | | | ||||| || || ||| ||| || | || Sbjct 2067369 AGGATAGCATACCATAGTTTCTGAGCCTTTACAGTCTGGCGACCACGGCCCTCCTTCTCA 2067428 Query 81130 TACTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCG 81189 || | |||| ||| ||||| | |||| | | || | ||| | || ||| Sbjct 2067429 TATCTCTCGTATAGAGCGTTGAACTCGTCACCATAGACGTCGGCAAGGCCAGGTGCCTCA 2067488 Query 81190 TTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGG 81249 | ||| || | || ||| || || ||||| ||| | |||||| |||||| Sbjct 2067489 TGAGGACAGAAGAGAGTCCATTCTTGGTTCTTCTCGACACGTTCCATGAACAAGTCAGGA 2067548 Query 81250 ATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGC 81309 |||| | |||| ||||| |||||| | |||| || | || ||||| | | Sbjct 2067549 GTCCACATGGCGTAGAACAAGTCGCGTGCTCTAACCTCTTCCTTGCCGTGGTTCTTTCTC 2067608 Query 81310 AACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCC 81369 | | | |||||| | | ||| || ||||||||||| || || | ||| | | || Sbjct 2067609 AGGTTCAAAAAGTCGAACACGTCTGCGTGCCATGGCTCGAGGTAGATGGCAAAAGCACCT 2067668 Query 81370 TTGCG---ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATA 81426 ||| | ||||||||| | |||||| || ||||| || || || || | ||| Sbjct 2067669 GGGCGCTTATTGCCACCCTGATCGACGTAGCGAGCAGTATTATTGAAGACGCGAAGCATG 2067728 Query 81427 GGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCA-- 81484 ||||| | || | || || || || || | || || || |||| || | Sbjct 2067729 GGGATAAGCCCGTTGGAGGTGCCATTGGTGCCTGCAATGTAGGATCCTGTGGCACGAATG 2067788 Query 81485 CCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCA 81544 | || ||||| |||| || || || | ||| || ||| ||||| || | Sbjct 2067789 CAATGGGCATTGA--GACCAATACCTCCAGCTGTCTTGGAGATCATGGCACAAGTCTTGA 2067846 Query 81545 TGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACA 81604 ||| ||||| |||||||||||||| |||| ||||||||||| |||||||||| |||| Sbjct 2067847 GGGTGTCATATATTCCCTCGATGCTGTCTTCTTTCATGTCAATCAAGAAACAGGAGGACA 2067906 Query 81605 TCTGAGGGCTTTTTGAG-----CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATA 81659 ||||| ||||| ||||| ||||| || || || | ||||| | || | Sbjct 2067907 GTTGAGG-----TTGAGGGGTTCCGGCGTTGAAAAGGGTGGGCGAAGCGTGGGTAAAGCA 2067961 Query 81660 ACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACC 81719 | ||||| || | || || || || | | ||||||||| | ||||||||| Sbjct 2067962 CTTCTGGGACATGAGATTGTACGTCTCGATGGCCTTTTCAATATCGTCGCTGTGAATACC 2068021 Query 81720 GATAGCTACACGCATAAACATGTACTGGGGC 81750 | || |||||||||| ||||| |||||| Sbjct 2068022 CACTGCCACACGCATAAGCATGTGTTGGGGC 2068052 >seq7 Length=4110827 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| ||||| |||||||| || || |||||||| ||||| | Sbjct 1063579 ATGCAAATCTTCGTGAAGACACTTACTGGCAAGACCATCACGCTTGAGGTCGAGTCCAGC 1063520 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | || | || || |||||||||||||| || || || |||||| Sbjct 1063519 GACACGATCGACAATGTCAAATCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 1063460 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || ||||||||||| || | || ||||| | ||||| || Sbjct 1063459 CAGCGCCTGATCTTCGCCGGCAAGCAACTCGAAGACGGCCGCACCCTGTCCGACTACAAC 1063400 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || || ||| | ||||| || || || Sbjct 1063399 ATCCAGAAGGAGTCGACCCTGCACCTGGTCCTCCGTCTCCGTGGCGG 1063353 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| ||||| |||||||| || || || |||||||| || | Sbjct 1063351 ATGCAAATCTTCGTAAAGACACTTACTGGCAAGACGATCACGCTGGAGGTTGAATCGAGC 1063292 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||| || || ||||||||||| || || || || |||||| Sbjct 1063291 GACACGATCGACAACGTCAAGAGCAAGATCCAGGACAAGGAAGGGATCCCGCCCGACCAG 1063232 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || ||||| || ||||| || ||||| | || || || | ||||| || Sbjct 1063231 CAGCGCCTGATCTTTGCGGGCAAGCAGCTGGAGGACGGCCGCACGCTCTCGGACTACAAC 1063172 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| |||||||| || || ||||| || | || || ||||| || Sbjct 1063171 ATCCAGAAGGAATCGACGCTCCATCTCGTGCTCCGGCTCCGCGGCGG 1063125 Score = 125 bits (138), Expect = 8e-24 Identities = 147/194 (76%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| ||||| |||||||| ||||| || ||||| ||| || | Sbjct 1063123 ATGCAAATCTTCGTAAAGACACTTACTGGCAAGACGATTACGCTGGAGGTGGAG--AGCT 1063066 Query 27466 --GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523 || | || | || | ||| | || || |||||||||||||| |||||||| |||| Sbjct 1063065 CAGACACGATCGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCTCCGGACC 1063006 Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTAT 27582 ||||||| || ||||| || || ||||| | ||||| | || || || ||| ||||| Sbjct 1063005 AGCAGCGGCTGATTTTCGCGGGCAAGCAGTTGGAGGACGGGCGGACTCTCAGC-GACTAC 1062947 Query 27583 AATGTCCAAAAGGA 27596 || |||| ||||| Sbjct 1062946 AACATCCAGAAGGA 1062933 >seq4 Length=6030834 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558 |||||||| || ||||| || |||||||| || || || || || || ||||||||||| Sbjct 3720578 GACAAGGAAGGCATTCCCCCGGACCAGCAACGCCTGATCTTCGCCGGCAAGCAACTCGAA 3720637 Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 || | || || || | ||||| || |||| |||||||| || || || || |||||| Sbjct 3720638 GACGGCCGCACTCTCTCCGACTACAACATCCAGAAGGAATCGACCCTCCACCTGGTCTTG 3720697 Query 27619 CGTCTTCGCGGTGG 27632 |||||||||||||| Sbjct 3720698 CGTCTTCGCGGTGG 3720711 >seq6 Length=4175021 Score = 105 bits (116), Expect = 8e-18 Identities = 283/429 (66%), Gaps = 4/429 (1%) Strand=Plus/Minus Query 31984 GACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCTGTCG 32043 || || || |||||| ||||| || || || || || ||| ||||| || ||| Sbjct 477130 GATGGTCTAAAGCCTGGTCAGCGAAAAGTCATGTATGCATGCTTCAAGCGCAATCTGAAA 477071 Query 32044 AGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCAC 32103 | || |||||||| || ||||| |||| | || | | || || |||||||| Sbjct 477070 AAGGATATGAAGGTTGCTGAGCTGGCGGGTTTGGTCGGTGGTATGACCGCGTATCACCAT 477011 Query 32104 GGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAAT 32163 || || | || |||||| || |||||| ||| || || | ||||||||| | || Sbjct 477010 GGTGAAACATCTCTCCAGCAGACGATTGTCGGCCTGGCCCAAAGCTTTGTCGGATCGAAC 476951 Query 32164 AACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGAT 32223 || | ||||| | ||||| || || || ||||| ||||| | || |||| ||| Sbjct 476950 AATGTCAACTTGTTGGAGCCCTCAGGCCAATTTGGTACCCGAAACCAGGGCGGCAGCGAT 476891 Query 32224 GCTGCGAGCTCCCGTTACATCTTCACCCGTC--TCGCACCTTCGACGCGCAAGATTTTCG 32281 |||| ||| | || ||||| |||||||||| |||| |||||| | | ||| | || Sbjct 476890 TCTGCAAGCGCTCGATACATTTTCACCCGTCTATCGC-CCTTCG-CAAGGAAGCTGTTTC 476833 Query 32282 ACCCGTCGGACGATGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCGGGTCGAGCCGG 32341 ||| | || || | | || || || | |||||| | || | ||||||| | Sbjct 476832 ACCAAGCCGATGAACCCCTTCTGTCCTATAACTATGATGATGACAAGAAGATCGAGCCCG 476773 Query 32342 TGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTGAACGGTGCAGAAGGCATCGGAACGG 32401 | | ||| ||| | | || ||| || | || || ||||| || || || || |||| Sbjct 476772 AGGTATACGTACCGATCGTCCCAATGGTCCTCGTCAATGGTGCTGACGGTATTGGCACGG 476713 Query 32402 GGTTCAGTT 32410 | | |||| Sbjct 476712 GCTGGAGTT 476704 Score = 98.7 bits (108), Expect = 1e-15 Identities = 133/183 (73%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473 ||| |||||||| || || |||||||| || || |||||||| ||||| || | || Sbjct 1382969 CTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGTCGTCCGACACGAT 1383028 Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533 | || | ||| | || || || |||||||| || || || || ||||||||||| | Sbjct 1383029 CGACAACGTCAAGTCCAAGATCCAAGACAAGGAAGGCATCCCGCCCGACCAGCAGCGATT 1383088 Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAA 27592 || || || || |||||||| || |||| || || || ||| ||||| || |||| | Sbjct 1383089 GATCTTCGCCGGCAAGCAACTTGAAGATGGCCGAACTCTGAGC-GACTACAACATCCAGA 1383147 Query 27593 AGG 27595 ||| Sbjct 1383148 AGG 1383150 Score = 84.2 bits (92), Expect = 2e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 30327 TGGAATTCCCATTAAGAAACACCCTACCGAAAAAATCTGGATCCCCGAACTCATTTTTGG 30386 ||| ||||| || ||| ||| | | ||||| |||| ||||| || | ||||| || Sbjct 478901 TGGTATTCCTATCGAGATCCACTCGAAAGAAAAGATCTACATCCCAGAGATGATTTTCGG 478842 Query 30387 GCACCTTTTGACAAGCTCCAACTACAACGACGAGGAGCAGCGCGTGACGGGTGGACGAAA 30446 || || || || |||| || ||| ||||| | || ||| | || ||||| | || Sbjct 478841 CCATCTCTTAACCGGCTCGAATTACGACGACAACGAACAGAAGATCACAGGTGGCAGGAA 478782 Query 30447 TGGCTACGGTGCAAAGCTCGCCAACGTTTTCAGTTCCCTATTCA 30490 |||||||||||| ||||| |||||| | ||||| || ||||| Sbjct 478781 TGGCTACGGTGCGAAGCTGGCCAACATCTTCAGCACCGAATTCA 478738 >seq5 Length=4609732 Score = 104 bits (114), Expect = 3e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || | ||||| ||||| | |||||| || || || ||||||||||| | Sbjct 1365202 ATGCAGATTTTCATGAAGACACTTACTGTCAAGACGATCACGCTGGAGGTTGAGTCGAGC 1365143 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || || | ||| || ||| |||||||||| || || | | |||||| Sbjct 1365142 GACACAATCAACAACATCAAGAGCAAGATTTAGGACAAGGAAGGGATCACATCCGACCAG 1365083 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || ||||| || ||||| || ||||| | || ||| | ||||| || Sbjct 1365082 CAGCGCCTGATCTTTGCGGGCAAGCAGCTGGAGGACGGCCGCACCAGGTCCGACTACAAC 1365023 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| |||||||| || || ||||| || || || ||||| || Sbjct 1365022 ATCCAGAAGGAATCGACGCTCCATCTCGTGCCCCGCCTCCGCGGCGG 1364976 Score = 95.1 bits (104), Expect = 1e-14 Identities = 133/189 (70%), Gaps = 17/189 (9%) Strand=Plus/Minus Query 27420 CAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAA 27479 |||||| ||||| |||||||| || || |||||||| ||||| | || || Sbjct 1365399 CAAGACACTTACTGGCAAGACCATCACGCTTGAGGTCGAGTCCAGCGA----------AA 1365350 Query 27480 TTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTT 27539 | | || || |||||||||||||| ||||| || || |||||||| || || || Sbjct 1365349 T-------CCAAGATCCAGGACAAGGAGGGCATTCCGCCCGAACAGCAGCGCCTGATCTT 1365297 Query 27540 TGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATC 27599 || || ||||||||||| |||| || ||| | ||||| || |||| ||||| || Sbjct 1365296 CGCCGGCAAGCAACTCGATGATGGCCGCACCAGGTCCGACTACAACATCCAGAAGGACTC 1365237 Query 27600 CACTCTTCA 27608 || || || Sbjct 1365236 GACCCTGCA 1365228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570308425300240