Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000835495.1_202015-02-
23] 277 sequences; 43,029,152 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq7 131 4e-25
seq6 125 2e-23
seq4 107 5e-18
seq5 87.8 4e-12
>seq7
Length=4110827
Score = 131 bits (144), Expect = 4e-25
Identities = 162/222 (73%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| |||||||| || | ||| | ||| || || |||| ||||| ||| | |||
Sbjct 1062902 ACGCAGTCTCAGCACCAAGTGCAACGTGCTCTCCTTCTGGATGTTGTAGTCGCTGAGAGT 1062961
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| ||| || || | |||||| || ||||| || || || || ||||| || ||||| ||
Sbjct 1062962 CCGCCCGTCCTCCAACTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGAGGAATGCC 1063021
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||||| |||||||| ||| || ||||| ||||||||| | ||||| || |
Sbjct 1063022 CTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATCGTGTCTGAGCTCTCCACCTCCAG 1063081
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||| ||||||||||| || | || |||| ||| | ||||||
Sbjct 1063082 CGTAATCGTCTTGCCAGTAAGTGTCTTTACGAAGATTTGCAT 1063123
Score = 125 bits (138), Expect = 2e-23
Identities = 155/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || || ||||| || ||||| || |||| ||||| || | | || | || ||
Sbjct 1063140 AGCACGAGATGGAGCGTCGATTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCC 1063199
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| || || ||||| || || || ||||||||||| || |||||||||||
Sbjct 1063200 TCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGGCGGGATCCCTTCCTTGTCC 1063259
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| || ||||| ||||| | ||| || || | ||||||||||
Sbjct 1063260 TGGATCTTGCTCTTGACGTTGTCGATCGTGTCGCTCGATTCAACCTCCAGCGTGATCGTC 1063319
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| || | || |||| ||| | ||||||
Sbjct 1063320 TTGCCAGTAAGTGTCTTTACGAAGATTTGCAT 1063351
>seq6
Length=4175021
Score = 125 bits (138), Expect = 2e-23
Identities = 126/164 (77%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585
|| |||| ||||| ||| || ||||| |||||||| || ||||| || ||||||||
Sbjct 1383148 TTCTGGATGTTGTAGTCGCTCAGAGTTCGGCCATCTTCAAGTTGCTTGCCGGCGAAGATC 1383089
Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645
| ||| || ||||||||||| || |||||||||||||||||||| ||| || |||
Sbjct 1383088 AATCGCTGCTGGTCGGGCGGGATGCCTTCCTTGTCTTGGATCTTGGACTTGACGTTGTCG 1383029
Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689
|| ||||| || | || || || | ||||| |||||||||||
Sbjct 1383028 ATCGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCCGT 1382985
>seq4
Length=6030834
Score = 107 bits (118), Expect = 5e-18
Identities = 101/129 (78%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
||||| | || ||| |||||||| || ||||| || |||| ||||| |||| | |||
Sbjct 3720705 CGAAGACGCAAGACCAGGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTG 3720646
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| || ||||| || ||||| || |||||||| || ||||| ||||| || ||||| |||
Sbjct 3720645 CGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGGTCCGGGGGAATGCCT 3720586
Query 225613 TCCTTGTCT 225621
|||||||||
Sbjct 3720585 TCCTTGTCT 3720577
>seq5
Length=4609732
Score = 87.8 bits (96), Expect = 4e-12
Identities = 92/121 (76%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 225509 GGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCT 225568
|||| || || || || || |||| ||||| |||| | || | ||||| || || |
Sbjct 1365226 GGTGCAGGGTCGAGTCCTTCTGGATGTTGTAGTCGGACCTGGTGCGGCCATCATCGAGTT 1365285
Query 225569 GCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCT 225628
|||| || |||||||| || || || || ||||||||||| || |||||||| |||||||
Sbjct 1365286 GCTTGCCGGCGAAGATCAGGCGCTGCTGTTCGGGCGGAATGCCCTCCTTGTCCTGGATCT 1365345
Query 225629 T 225629
|
Sbjct 1365346 T 1365346
Score = 84.2 bits (92), Expect = 5e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 225505 ACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCT 225564
|| || ||||| || ||||| || |||| ||||| |||| | || | || || ||
Sbjct 1364994 ACGAGATGGAGCGTCGATTCCTTCTGGATGTTGTAGTCGGACCTGGTGCGGCCGTCCTCC 1365053
Query 225565 AGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGG 225624
|||||||| || || ||||| || || || ||||||| | || ||||||||||| |
Sbjct 1365054 AGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGATGTGATCCCTTCCTTGTCCTAA 1365113
Query 225625 ATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTG 225684
||||| ||| | | ||| ||||| | || || || | |||||||||||||
Sbjct 1365114 ATCTTGCTCTTGATGTTGTTGATTGTGTCGCTCGACTCAACCTCCAGCGTGATCGTCTTG 1365173
Query 225685 CCCGTCAAAGTTTTTATGAACACTTGCAT 225713
| || | || || ||||| | |||||
Sbjct 1365174 ACAGTAAGTGTCTTCATGAAAATCTGCAT 1365202
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192526967632238
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |