Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000835495.1_202015-02- 23] 277 sequences; 43,029,152 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq7 141 2e-28 seq6 129 1e-24 seq4 100 7e-16 >seq7 Length=4110827 Score = 141 bits (156), Expect = 2e-28 Identities = 144/188 (77%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || || || || || ||||| || || |||||||| ||||||||| Sbjct 1063120 CAAATCTTCGTAAAGACACTTACTGGCAAGACGATTACGCTGGAGGTGGAGAGCTCAGAC 1063061 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| ||||| |||||||| || || || |||||||||||||| Sbjct 1063060 ACGATCGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAGCAG 1063001 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| || || ||| | || || || ||||||| ||| || ||| || Sbjct 1063000 CGGCTGATTTTCGCGGGCAAGCAGTTGGAGGACGGGCGGACTCTCAGCGACTACAACATC 1062941 Query 178104 CAAAAAGA 178111 || || || Sbjct 1062940 CAGAAGGA 1062933 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| || || || || || || ||||| || ||||| || | ||| Sbjct 1063576 CAAATCTTCGTGAAGACACTTACTGGCAAGACCATCACGCTTGAGGTCGAGTCCAGCGAC 1063517 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || |||||| ||||| |||||||| || || ||||| ||||||||||| Sbjct 1063516 ACGATCGACAATGTCAAATCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAG 1063457 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || || |||||||| || | || || |||| || ||| || Sbjct 1063456 CGCCTGATCTTCGCCGGCAAGCAACTCGAAGACGGCCGCACCCTGTCCGACTACAACATC 1063397 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 1063396 CAGAAGGAGTCGACCCTGCACCTGGT 1063371 >seq6 Length=4175021 Score = 129 bits (142), Expect = 1e-24 Identities = 136/179 (76%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 ||||| || || ||||| || || || |||||||| ||||| || || ||||| ||| Sbjct 1382970 TTCGTCAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGTCGTCCGACACGATC 1383029 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || |||||||| ||||| || ||||| ||||| ||||| || |||||||| ||| | Sbjct 1383030 GACAACGTCAAGTCCAAGATCCAAGACAAGGAAGGCATCCCGCCCGACCAGCAGCGATTG 1383089 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 ||||||||||| || || || |||||||| | ||||| ||| || ||| |||| || Sbjct 1383090 ATCTTCGCCGGCAAGCAACTTGAAGATGGCCGAACTCTGAGCGACTACAACATCCAGAA 1383148 >seq4 Length=6030834 Score = 100 bits (110), Expect = 7e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 178014 GACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAA 178073 ||||| ||||| || || |||||||||||||| || ||||||||||| || || |||||| Sbjct 3720578 GACAAGGAAGGCATTCCCCCGGACCAGCAACGCCTGATCTTCGCCGGCAAGCAACTCGAA 3720637 Query 178074 GATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || || | ||||| |||| || ||| |||| || ||||| || || || || || ||| Sbjct 3720638 GACGGCCGCACTCTCTCCGACTACAACATCCAGAAGGAATCGACCCTCCACCTGGTCTTG 3720697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203726927882738