Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosporium_20cladosporioides_20[genbank_20GCA_5F001931875.2_202017 -02-15] 843 sequences; 47,573,060 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq553 136 8e-27 seq744 125 2e-23 seq657 123 5e-23 seq141 84.2 5e-11 >seq553 Length=41262 Score = 136 bits (150), Expect = 8e-27 Identities = 444/677 (66%), Gaps = 12/677 (2%) Strand=Plus/Minus Query 318997 TCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATCC 319056 |||||||| | | |||||||||||||| || | ||| || || |||| | ||| Sbjct 40698 TCTTCACCAGTGTGGTAACGCCATTGGATGTATTCGTTAGGGGTTTTGTCCAAGTGACGT 40639 Query 319057 TCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCAA 319116 |||||||||||||||||||| || || || || |||| |||| || ||||| |||| Sbjct 40638 TCGATGTGGTGGAAAGCATGTTGAGCGACATAGGCAATGCGCAAGTTAGGATGTCTCCAG 40579 Query 319117 ACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCTTTTCCCC 319176 ||| |||| | || || |||| || || | || ||| || | ||| || || Sbjct 40578 ACAGTACCAACCTCGGACTCGATTTCACCAGTCAACAACTTGATCAAGGTAGACTTACCA 40519 Query 319177 GCACCGTTTTCGCCCACCACACCGATCCTGGAGTTCAGCGATACCTGGGCATTCACGTTG 319236 |||||||| || | || | | | |||| || || || | |||| | | || Sbjct 40518 GCACCGTTGGGACCAATGACGGCAACACGGGAGGCAAGAGA-ACAT-TGCATGGA-GATG 40462 Query 319237 TCAAAGATTAGTTT---TTCCGTACCCGGATACTTGAACCCCACACCGCGTAGCTTCATG 319293 |||| | | | || || | ||| ||||||| ||| | || | ||||| | Sbjct 40461 TCAATCAGTTGCTTGCGGTCAGAACCAGGATACTGGAAGTCAACGTTCTTCATCTTCAAG 40402 Query 319294 ATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGGAACTTCCACGTG 319353 || ||||| ||||| | ||||||| || | ||| || ||||| ||||| || || Sbjct 40401 ATTGCACGTTCCTTAGTCTTGATACCTTCCAAGAAACCAGGCTCAGGGAAAGAGAACTTG 40342 Query 319354 GTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTG-ATTCGGGACGCTTCTTCACGAACTC 319412 | | || | | || ||||||| || | | ||||| |||||| ||||| || Sbjct 40341 ATTTGAGTAGCTTCCAAGGAGTAGTAAGAGGCAGCACGAGGGAC-CTTCTTTACGAATTC 40283 Query 319413 GGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGT 319472 ||||| || |||||||| ||| ||||| ||| |||||||| || || || || Sbjct 40282 GGACAAGTTACCCTTGTAGCGCTTGAGCTTATAGTTGGGTTCGTAGTGAATGATGTCGGA 40223 Query 319473 GCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAG 319532 || ||| || | ||| || |||||||| || ||||| | | | ||| ||| | Sbjct 40222 ACAGACATGATCCAAGAAACCAGAGTCGTGGGAGACAATGATAGAGGTAACAGTCTTCAA 40163 Query 319533 GTTGATCAGGTATTCAATCAACCACCTCACGTTAGAC-ACAGAAAGATGGTTGGTCGGCT 319591 | ||||| | || ||| ||||| ||| ||| | || ||||| || | Sbjct 40162 ACCAAGAAGGTAGTTCTCCAGCCAGGCAACGTT-GACAACATCCAAGTGATTGGTAGGTT 40104 Query 319592 CGT-CAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAGTTTCATT 319650 ||| ||| ||| || | | || |||| | ||| ||||| |||||||| || ||||| Sbjct 40103 CGTCCAACAAG-AGGATATCAGCATTCATCAACATAGCACGGGCAAGAGCAAGCTTCATC 40045 Query 319651 TTCCACCCTCCGGAAAG 319667 ||||| || || || || Sbjct 40044 TTCCAACCACCAGAGAG 40028 >seq744 Length=38458 Score = 125 bits (138), Expect = 2e-23 Identities = 144/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 230446 CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 230505 || || |||||||| ||| | ||| | || |||||||||||||| || || || | Sbjct 30720 CTCATCGGCATGAATTCTGCTTTGATGTGCCAATACATCGAATTCGTTGCTGATCGTCTC 30661 Query 230506 TTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAG 230565 | ||||| ||||| | || || | |||| ||| || || |||| |||||||| Sbjct 30660 ATGGTTGCTCTTGGATTTGACAAGATTTACATGGCTACCAATCCATTTGACTTTATGGAC 30601 Query 230566 CTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGG 230625 | || || |||||||| |||||||||||||| |||||||||||| ||||||||| | Sbjct 30600 ATGATCTCTCTTCAAGGCAAGACCAACTTCTTTGAAAAGCGTGTCTCTGACTATCAACGT 30541 Query 230626 CCTGGTGTGATGAA 230639 ||||||| ||||| Sbjct 30540 GCTGGTGTCATGAA 30527 >seq657 Length=446211 Score = 123 bits (136), Expect = 5e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 230450 TTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTG 230509 |||| |||||| | | || ||| | ||||||||||| ||||| ||||||||| | | | Sbjct 211955 TTGGTATGAACTCCAAGCTCATGTGCCAGTACATCGAGTTCGTTGCCGACCGCCTGCTGG 211896 Query 230510 TTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCA 230569 | | ||||| || |||| |||||| | | |||||||| | || ||||| || Sbjct 211895 TCTCTCTTGGCAACAAGAAGTACTACAACGCCACAAACCCCTTCGACTTCATGGACAACA 211836 Query 230570 TTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTG 230629 | ||||| || ||||||||||||||||| ||||||||| ||||||| |||| | | | Sbjct 211835 TCTCGCTCGCTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTACCAGAAGGCCG 211776 Query 230630 GTGTGATG 230637 |||| ||| Sbjct 211775 GTGTCATG 211768 >seq141 Length=39483 Score = 84.2 bits (92), Expect = 5e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 318996 GTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATC 319055 ||||||||| | ||||||||||| || || || | ||| || ||| | || | || | Sbjct 18448 GTCTTCACCAGTAGCATAACGCCACTGAATGTATTCGTTTGGCGTCTTATCCAAGTGTTG 18507 Query 319056 CTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCA 319115 ||||||||| ||||| || || || || || || |||| || | ||| ||||||||||| Sbjct 18508 CTCGATGTGATGGAAGGCGTGTTGAGCAACATAGGCAATGCGTAAATTAGGATGCTTCCA 18567 Query 319116 AACACTACC 319124 || |||| Sbjct 18568 TACCGTACC 18576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057812574509090