Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosporium_20cladosporioides_20[genbank_20GCA_5F001931875.2_202017 -02-15] 843 sequences; 47,573,060 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq657 197 1e-45 seq812 131 2e-25 seq810 123 3e-23 seq799 104 2e-17 seq744 98.7 1e-15 >seq657 Length=446211 Score = 197 bits (218), Expect = 1e-45 Identities = 215/285 (75%), Gaps = 3/285 (1%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| ||||| || |||||||| | |||||| | || ||| Sbjct 212687 ATCTGGCAGATGTACAAGAAGGCAGAGGCTTCCTTCTGGACTGCTGAGGAGATCGATCTG 212628 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 ||||||||| | ||||||| | ||| | ||| | |||||||| | |||||| Sbjct 212627 TCCAAGGACCTGCACGACTGGAACAACCGCCTCAACAATGACGAGCGCTACTTCATCTCC 212568 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 || || ||||| || |||||||| |||||||||||||||||||| || ||||||||| Sbjct 212567 CATGTCCTGGCTTTCTTCGCCGCGTCTGACGGCATCGTCAACGAGAACCTCGTCGAGCGT 212508 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| | ||||| ||||| | ||||| || ||||||||||| || |||||| ||| Sbjct 212507 TTCAGTGGCGAGGTCCAGGTCCCTGAGGCTCGTTGCTTCTACGGTTTCCAGATCATGATG 212448 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 |||||| | ||||| || | || || ||||||||||| ||| Sbjct 212447 GAGAACATCCACTCCGAGACATACTCCCTTCTCATCGACACCTAC 212403 Score = 196 bits (216), Expect = 5e-45 Identities = 312/448 (70%), Gaps = 0/448 (0%) Strand=Plus/Minus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041 |||||||||| ||||| | ||||||||| | || ||| || | |||| | ||||| Sbjct 212279 AGAAGGCCGACTGGGCCATTCGCTGGATCCAGGACAAGGAGTCCACTTTCGCCCAGCGCT 212220 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||| |||||||| || || ||||| ||||||| || ||| ||||||| | || || | Sbjct 212219 TGGTTGCCTTCGCTGCTGTTGAGGGTATCTTCTTCTCTGGCTCTTTCGCCTCTATCTTCT 212160 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| || ||||||||||| || ||||| ||| |||||||| ||||| | | Sbjct 212159 GGCTGAAGAAGCGTGGCCTCATGCCTGGTCTGACCTTCTCTAACGAGCTGATCTCTCGTG 212100 Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGA 117221 | ||||||||||| |||||| || ||| |||||||| || || | || || Sbjct 212099 ATGAGGGTCTGCACACCGACTTCGCTTGTCTGCTGTTCTCCCACCTGAACAACCGCCCCT 212040 Query 117222 GCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCA 117281 | | | ||| | ||||| || || || |||| ||| |||||| ||||| | Sbjct 212039 CACCTGAGGTTGTCGAGAAGATCATCGTTGATGCCGTCGACATTGAGCAGGAGTTCCTGA 211980 Query 117282 CCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCG 117341 | || || || || || || || || | || | | | |||| || ||||||| Sbjct 211979 CGGACGCCCTCCCCGTTGCCCTCCTTGGTATGAACTCCAAGCTCATGTGCCAGTACATCG 211920 Query 117342 AGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCA 117401 ||||||| |||||| | |||||| || || | | | ||| |||||||| | | | Sbjct 211919 AGTTCGTTGCCGACCGCCTGCTGGTCTCTCTTGGCAACAAGAAGTACTACAACGCCACAA 211860 Query 117402 ACCCGCTGGACTTTATGAACCTCATCTC 117429 |||| | ||||| ||| || |||||| Sbjct 211859 ACCCCTTCGACTTCATGGACAACATCTC 211832 >seq812 Length=913560 Score = 131 bits (144), Expect = 2e-25 Identities = 144/189 (76%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770 |||| || || ||||||||| |||| ||||| || | |||| | | | |||| ||||| Sbjct 529413 TCACTGGAAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATCGACAACG-TCAAG 529355 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 || || | ||||| ||||| ||||| | |||||||| || ||||||| ||| || Sbjct 529354 AGCAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAGCAGCGTCTCATCTTCGCTGGA 529295 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 || ||||| || |||| ||||| ||| ||||||||||||||||||||| |||| ||| Sbjct 529294 AAGCAGCTTGAGGACGGTCGCACGCTCTCTGACTACAACATCCAGAAGGAGTCCACCCTG 529235 Query 40891 CATCTAGTG 40899 || || ||| Sbjct 529234 CACCTGGTG 529226 Score = 123 bits (136), Expect = 3e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || || || || |||||| |||| || || | || Sbjct 529207 ATGCAGATCTTCGTGAAGACCCTTACTGGAAAGACTATCACCCTCGAGGTTGAGTCTTCC 529148 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| || || | || || ||||| ||||| | ||||| Sbjct 529147 GACACCATCGACAACG-TCAAGAGCAAGATCCAGGATAAGGAGGGTATCCCTCCCGACCA 529089 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| || |||| ||| || || ||||| || || | ||||| ||| ||||||||| Sbjct 529088 GCAACGTCTGATCTTCGCTGGAAAGCAGCTTGAGGATGGCCGCACACTCTCCGACTACAA 529029 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 ||||||||||||| | || || || || || ||||| Sbjct 529028 CATCCAGAAGGAGTCGACCCTTCACCTCGTCCTGCGC 528992 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || ||||| || ||||| | || || ||| ||| | Sbjct 528751 ATGCAGATTTTTGTTAAGACTTTGACTGGCAAGACTATCACATTGGAGGTTGAATCCAGC 528692 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | ||| || |||| ||||| || || ||||| | ||||| Sbjct 528691 GACACAATTGACAACG-TGAAGAGCAAGATTCAAGACAAGGAAGGTATCCCTCCTGACCA 528633 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || || || |||||||| |||| || ||| | ||||||||| Sbjct 528632 GCAGCGCCTGATCTTTGCTGGTAAGCAGCTGGAGGACGGTCGTACCTTGTCCGACTACAA 528573 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| | || ||||| || || |||| Sbjct 528572 CATCCAGAAGGAATCTACCCTGCACCTGGTTCTGCG 528537 >seq810 Length=1034423 Score = 123 bits (136), Expect = 3e-23 Identities = 138/182 (76%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || ||||| || ||||| ||| |||| ||||| | |||||| | Sbjct 582831 TTCGTCAAGACCCTGACGGGTAAGACCATTACCCTCGATGTCGAGTCGTCCGACACGATC 582890 Query 40759 CA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817 | |||| |||||| || || | ||||| |||||||| ||| |||||||||| || || Sbjct 582891 GACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCT 582949 Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877 |||| ||| || || ||||| || || | ||||| || | |||||||||||||||||| Sbjct 582950 GATCTTCGCCGGAAAGCAGCTCGAAGATGGCCGCACTCTGAGCGACTACAACATCCAGAA 583009 Query 40878 GG 40879 || Sbjct 583010 GG 583011 >seq799 Length=343686 Score = 104 bits (114), Expect = 2e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| ||||| |||||| | |||||||| || || |||| ||| || || ||||| || Sbjct 28898 GACAAGGAGGGTATCCCCCCTGACCAGCAGCGTCTGATCTTCGCTGGTAAGCAGCTCGAG 28839 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 |||| ||||| ||| ||||||||||||||||||||| | || || || || ||| | Sbjct 28838 GACGGTCGCACTCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTTCACCTCGTGCTC 28779 Query 40903 CGCTTGAGGGGCGGCGG 40919 ||| || | || || || Sbjct 28778 CGCCTGCGTGGTGGTGG 28762 >seq744 Length=38458 Score = 98.7 bits (108), Expect = 1e-15 Identities = 216/321 (67%), Gaps = 2/321 (1%) Strand=Plus/Minus Query 117035 GAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCC 117094 ||||| || || ||||| || || ||||| || | ||||| || || || || || Sbjct 30987 GAGCGTCTTGTTGCCTTTGCTGCTGTCGAAGGTATTTTCTTCTCTGGTTCCTTTGCTTCC 30928 Query 117095 ATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATC 117154 || ||||||||||||||||| || | ||||| || |||| |||||||| || | ||| Sbjct 30927 ATTTTTTGGCTCAAGAAACGTGGTTTGATGCCTGGTTTGACATTCAGCAATGAATTGATC 30868 Query 117155 TCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCAT-TTGGTGCA 117213 | | || || || || ||| |||||||| ||| | | || | ||| || || | Sbjct 30867 TGTCGTGATGAAGGCCTTCATACTGACTTTGCTTGTCTTTTATTTACCCATCTTCGT-AA 30809 Query 117214 GCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCG 117273 ||| || ||| | ||||||| ||| ||| || || || ||| ||| || ||| Sbjct 30808 GCGTCCTAGCCAAGAACGCGTCAAGGATATCATCTTGGAAGCTGTCAGCATTGAACAGGA 30749 Query 117274 CTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCA 117333 || | || || || || || || ||| | || | |||| | ||||| || Sbjct 30748 ATTTTTGACGGATGCTCTTCCCGTTGCTCTCATCGGCATGAATTCTGCTTTGATGTGCCA 30689 Query 117334 ATACATCGAGTTCGTCGCCGA 117354 ||||||||| ||||| || || Sbjct 30688 ATACATCGAATTCGTTGCTGA 30668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515213770877680