Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosporium_20cladosporioides_20[genbank_20GCA_5F001931875.2_202017 -02-15] 843 sequences; 47,573,060 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq812 116 2e-21 seq810 86.0 4e-12 >seq812 Length=913560 Score = 116 bits (128), Expect = 2e-21 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | ||| |||||||| | ||| ||| ||||| |||||||||||||| Sbjct 528524 TCCACCACGGAGTCGCAGAACCAGGTGCAGGGTAGATTCCTTCTGGATGTTGTAGTCGGA 528583 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC--GACG 34279 || ||| |||| |||| |||||| || || || || || ||||||||||| || | Sbjct 528584 CAAGGTACGACCGTCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCAGGAGG 528643 Query 34280 GGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCG 34339 | || || |||||||| ||||| ||| | | | | || | ||| | ||||| Sbjct 528644 GATAC-CT-TCCTTGTCTTGAATCTTGCTCTTCACGTTGTCAATTGTGTCGCTGGATTCA 528701 Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || |||| ||||| || ||||| || | ||| || ||||| |||||||| Sbjct 528702 ACCTCCAATGTGATAGTCTTGCCAGTCAAAGTCTTAACAAAAATCTGCAT 528751 Score = 113 bits (124), Expect = 3e-20 Identities = 167/232 (72%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || || ||||| | |||| || ||||| |||||||| |||||| Sbjct 528753 CCACCACGCAGGCGGAGGACAAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAATCGGAC 528812 Query 34223 A-GCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 | | || ||| | || ||||||||||| || || || || || |||||||||||| || Sbjct 528813 AAGGTG-CGGCCATCTTCCAACTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGAGG 528871 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGA----ATCGGTCGATT 34337 | || || || || ||| ||||| | || | |||||| ||| | ||||| Sbjct 528872 GATGCCTTCTTTATCTTGGATC--TTGCTCTTGA--CGTTATCGATGGTATCTGACGATT 528927 Query 34338 CGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||| || || || |||||||| ||||| || || || |||||||| Sbjct 528928 CGACTTCCAGAGTAATAGTCTTGCCGGTCAGAGTCTTGACGAAAATCTGCAT 528979 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | ||| || ||||| | || || ||||| |||||||||||||| Sbjct 528981 CCTCCACGGAGGCGCAGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAG 529040 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | |||||| || ||||| || || || ||||||||| || Sbjct 529041 AGTGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAGATCAGACGTTGCTGGTCGGGAGGG 529100 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||| || ||||| ||| | | | | || | |||| || || || Sbjct 529101 ATACCCTCCTTATCCTGGATCTTGCTCTTGACGTTGTCGATGGTGTCGGAAGACTCAACC 529160 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || || || || || || ||||| ||||||||||| Sbjct 529161 TCGAGGGTGATAGTCTTTCCAGTAAGGGTCTTCACGAAGATCTGCAT 529207 Score = 82.4 bits (90), Expect = 5e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||||||| | || || ||||| ||||||||||| || ||| || |||| Sbjct 529224 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGCGTGCGACCGTCC 529283 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || ||||| ||||| ||||||||||| || | | ||||||||| Sbjct 529284 TCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCC 529343 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | || | || ||||| || | |||||||| Sbjct 529344 TGGATCTTGCTCTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTC 529403 Query 34358 TTGCCGGTGA 34367 || || |||| Sbjct 529404 TTTCCAGTGA 529413 >seq810 Length=1034423 Score = 86.0 bits (94), Expect = 4e-12 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261 ||||| |||||||||||| ||| ||| | || || | |||||| || ||||| || Sbjct 583009 TTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCATCTTCGAGCTGCTTTCCGGCGAAGATC 582950 Query 34262 AGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT 34321 || ||||||||||| ||| | || ||||||||| ||||| ||| | | | | Sbjct 582949 AGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCG 582890 Query 34322 ATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAG 34381 |||| |||| ||| ||||| || | || ||||| || || || || || || || ||| Sbjct 582889 ATCGTGTCGGACGACTCGACATCGAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAAG 582830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323068680738080