Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosporium_20cladosporioides_20[genbank_20GCA_5F001931875.2_202017 -02-15] 843 sequences; 47,573,060 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq744 259 6e-64 seq578 140 4e-28 seq657 116 5e-21 seq723 111 2e-19 >seq744 Length=38458 Score = 259 bits (286), Expect = 6e-64 Identities = 569/846 (67%), Gaps = 9/846 (1%) Strand=Plus/Plus Query 33293 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 33352 ||| || ||| ||||| ||||| || || || || || |||| | || || | || Sbjct 30544 TTGATAGTCAGAGACACGCTTTTCAAAGAAGTTGGTCTTGCCTTGAAGAGAGATCATGTC 30603 Query 33353 CATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATCAA 33412 ||| || ||||| ||||||||| | ||||||| || | |||||| | || || | Sbjct 30604 CATAAAGTCAAATGGATTGGTAGCCATGTAAATCTTGTCAAATCCAAGAGCAACCATGAG 30663 Query 33413 TCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGTTT 33472 | ||| || |||||||| || ||| ||||| || ||||||| || ||||| Sbjct 30664 ACGATCAGCAACGAATTCGATGTATTGGCACATCAAAGCAGAATTCATGCCGATGAGAGC 30723 Query 33473 AACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATAAA 33532 ||| |||||||| | || | |||||| ||||||||| || || | || ||| Sbjct 30724 AACGGGAAGAGCATCCGTCAAAAATTCCTGTTCAATGCTGACAGCTTCCAAGATGATATC 30783 Query 33533 TCTAACGGTTTCTTCACTCGGTGGATGTAATAA-ATGTTTAAACATCAAACATGCGAAAT 33591 | ||| ||||| || || | | || || ||| |||| | | ||| || || | Sbjct 30784 CTTGACGCGTTCTTGGCTAGGACGCT-TACGAAGATGGGTAAATAAAAGACAAGCAAAGT 30842 Query 33592 CGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTA 33651 | || || || || || | || || ||||| || || || | || ||||| | Sbjct 30843 CAGTATGAAGGCCTTCATCACGACAGATCAATTCATTGCTGAATGTCAAACCAGGCATCA 30902 Query 33652 GGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTA 33711 ||||| || || |||||||| |||||||| || || || || ||||| || ||||| | Sbjct 30903 AACCACGTTTCTTGAGCCAAAAAATGGAAGCAAAGGAACCAGAGAAGAAAATACCTTCGA 30962 Query 33712 CTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAG 33771 | ||||||||||||| ||| | ||| || || || | |||||||| | Sbjct 30963 CAGCAGCAAAGGCAACAAGACGCTCAGCAAAAGAACCGTTAGAGGAAATCCACTTGAAGG 31022 Query 33772 CCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttt 33831 ||||||| ||||| |||| | |||||| || || || || ||| |||||| | || Sbjct 31023 CCCAATCAGCCTTTCTTTTGATACAAGGGATAGTGTCAATAGCAGAAAAGAGCATTTCTT 31082 Query 33832 tttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGT 33891 | || | ||||||| | |||||| || ||||||||||| || |||| | ||||| | Sbjct 31083 TCTCTTGGTTATCTTTGATATAAGTGTCAATCAAAAGACTGTAAGTTTCTGCGTGAATAT 31142 Query 33892 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTAC 33951 ||||||| || ||||| || ||||||||| |||| || | ||||| ||||| || Sbjct 31143 TTTCAATCATGATTTGAAAGCCATAGAAACATTTAGCTTCAGGAATCTTGACTTCATCAC 31202 Query 33952 AAAATCGTTCTG--CTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAA 34009 |||| ||| || | || |||||||| || || ||||| | ||||| || || || Sbjct 31203 AAAA--GTTTTGAACCAAGTTTTCATTAACAATGCCATCTGAACCAGCAAAGAAGGCTAA 31260 Query 34010 TACATGTTTTATAAAATATTTTTCGTCT--GGTGTTAGT-TTATTCCAATCATTGATATC 34066 || | ||||| | ||||| | ||| | | || | |||||||| | || Sbjct 31261 GACGCGAGAGATAAAGAAGCGTTCGTTTTCGGTCATCTTGTTTTCCCAATCATGAAGGTC 31320 Query 34067 TTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATT 34126 || | ||| | |||||| |||||||||| || || || || || ||||| | | Sbjct 31321 CTTGCTCAAATCGATTTCTTCAGCTGTCCAAAAGGAAGCTTCAGCTTTCTTATAGAATTG 31380 Query 34127 CCAGAT 34132 |||||| Sbjct 31381 CCAGAT 31386 >seq578 Length=440600 Score = 140 bits (154), Expect = 4e-28 Identities = 543/842 (64%), Gaps = 16/842 (2%) Strand=Plus/Minus Query 63248 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 63306 ||| || |||| | || || || ||||| |||||||| ||| |||| || || ||| | Sbjct 115942 CCAGTCACCGTTAGACTCAACACGCTTCATGAAGAGATCGGGAGTCCAGAGGGC-ATAGA 115884 Query 63307 ATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 63366 | || || | || ||| || || || || ||||| ||| || | |||| | | Sbjct 115883 AGAGGTCACGTGCTCTGACCTCTTCCTTACCGTGGTTCTTGCGAAGGTCCAAGAACTCAA 115824 Query 63367 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 63426 || || || ||||| || |||| ||| || || | | | ||||| || ||||| || | Sbjct 115823 AGATGTCGGAGTGCCAGGGCTCCAGGTAGATAGCGAAAGCACCAGGGCGCTTGTTCCCGC 115764 Query 63427 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTG 63486 |||| || | |||||| || ||||| || | |||| | ||| || | || ||||| | Sbjct 115763 CCTGGTCAACGTATCTTGCAGTGTTGTTGAACACTCGAAGCATAGGGACAAGCCCGTTGG 115704 Query 63487 ATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAA--TTGATAG 63544 | | || || ||||| ||| || || | ||||| ||| | |||| | Sbjct 115703 AAGTTCCGTTAGTACCACCGATGTAAGAACCTGTAGCACGGATACGGTGGACGTTGA--G 115646 Query 63545 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCC 63604 ||| || || || || | || ||||| | || || || || ||||||||||| || Sbjct 115645 ACCAATACCACCCGCAGTCTTGGAGATCATGGCACAAGTCTTCAAGGTGTCATAGATACC 115586 Query 63605 TTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGT 63664 || ||||| || || |||| | | || || ||| | || || | ||| ||| Sbjct 115585 CTCAATGCTGTCCTCCTTCATATCGATAAGGAAGCAGGAGGCCAGCTGCGGCTGAGGAGT 115526 Query 63665 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 63724 || || || || | || || || ||||| || || |||| | || | |||||||| Sbjct 115525 ACCGGCGTTGAACAGAGTCGGCGAGGCGTGAGTGAAGTATTTCTGGGACATCAGATTGTA 115466 Query 63725 CGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACA 63783 ||||| ||| | || | || || | || ||||| || || |||||||| | || Sbjct 115465 GGTCTCGATAACCTTCTCGAGGTCATCACCG-TGGATTCCGACCGCAACACGCATAATCA 115407 Query 63784 TGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAG 63843 |||||||||| | ||| ||| || || || | || || ||| ||||| || Sbjct 115406 TGTGCTGAGGACGCTCAGCAACCTTTCCATTGATGCGGAGCAGATACGATCGTTCCAGAG 115347 Query 63844 TTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAG 63901 | || || || || || | ||| ||||| || || || |||| |||| | || || | Sbjct 115346 TCTTGAATCCGAAGTATTGGTAGTTGAAA--TCACGGTCATAAACAATAGCGGAGTTCAA 115289 Query 63902 CTTATCCTTATATTTGTTAACTATATCCATGGTAATACTT--GAAATAATCGGAGAATGT 63959 | |||| || || ||| || || || | ||| || || ||||| | | Sbjct 115288 TTCATCCGCATGCTTCATAATGATTTCATACGT--TTCTTTCGATATCATCGGCGCCGGC 115231 Query 63960 TTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttt 64019 || ||| || || || ||||||| | | | |||| || || | || | || Sbjct 115230 TTATTATTCTTCGGGTTGACATAGTGGTAAAGGTCCTGGATGACCAGAGAGAACTGCTTC 115171 Query 64020 tttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGA 64079 || || | |||||| || || || | |||||| | || || || || ||||| || || Sbjct 115170 TTGGTCTGCTTGTGGAGGTTGGACACGGCTATACGCGCAGCGAGGATAGCATAGTCTGGG 115111 Query 64080 TG 64081 || Sbjct 115110 TG 115109 >seq657 Length=446211 Score = 116 bits (128), Expect = 5e-21 Identities = 118/154 (77%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632 |||| || ||| ||||| ||| |||||||||||| || | | || | |||||||| Sbjct 212063 AACAGCAGACAAGCGAAGTCGGTGTGCAGACCCTCATCACGAGAGATCAGCTCGTTAGAG 212122 Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 || || || || ||||| ||||||||||| || ||||| || || || ||||| || || Sbjct 212123 AAGGTCAGACCAGGCATGAGGCCACGCTTCTTCAGCCAGAAGATAGAGGCGAAAGAGCCA 212182 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAA 33726 || |||||||| || || || ||||| ||||||| Sbjct 212183 GAGAAGAAGATACCCTCAACAGCAGCGAAGGCAA 212216 >seq723 Length=18298 Score = 111 bits (122), Expect = 2e-19 Identities = 278/421 (66%), Gaps = 5/421 (1%) Strand=Plus/Plus Query 62084 ATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTT 62143 ||||||||| || || |||| || |||| | ||||| |||||| || | ||| Sbjct 4430 ATAGTACATGCCAGTCTTTAATCCCTTCTTCCAGGCATAAAAGTGCATAGAGGTCAATTT 4489 Query 62144 GGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCC 62203 | | | | || || || || | ||||||||||||| ||| ||||| || ||||| Sbjct 4490 GCCAAAGTTTGGTTCGGCAGTAAACAAATTCATAGATTGAGATTGGTCGATAAAAGCTCC 4549 Query 62204 CCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAAC 62263 || || || ||||| | || || || |||||| ||| ||||| | ||||| || | Sbjct 4550 TCTATCAGCGGCCATGTCAATAATAGTTCTTTGTGAAATCTCCCATACTGTTTTGTATAG 4609 Query 62264 TCGCTTAATATCTTCTGGAAGGTTTGTATTCTGAATGGAT----CCACCATCTACCATAA 62319 || | ||| || |||| | | | | | ||||| || |||| | || | Sbjct 4610 CTTTTTGAGATCATCAGGAACGCCGGGAATACG-TTGGATACTACCGCCATGAGCAATCA 4668 Query 62320 TCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCG 62379 || | |||||||| | |||||||||||| | ||| | | | | | | |||| Sbjct 4669 TCATGTTCTTGATGTTATCATTCCATAAATCGAGCTCAATGAGGTCATTCAATAAATGCT 4728 Query 62380 GGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACG 62439 |||| |||| ||||||||| ||| || | || || |||||||| || || || | Sbjct 4729 GGTTGACTATTTGGAATTCACCACTTTGAACACGACGCGTATAAATATTGCTAGTGTAAG 4788 Query 62440 GTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 62499 | || | | || ||||| ||||| |||||| ||| ||||| |||||||| || | Sbjct 4789 GCTCGAAGCATTCGTTATTGCCCAATATTTGACTAGTGCTAGCAGTAGGCATAGGAGCAA 4848 Query 62500 C 62500 | Sbjct 4849 C 4849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629810963297040