Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosporium_20cladosporioides_20[genbank_20GCA_5F001931875.2_202017 -02-15] 843 sequences; 47,573,060 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq744 190 2e-43 >seq744 Length=38458 Score = 190 bits (210), Expect = 2e-43 Identities = 486/728 (67%), Gaps = 19/728 (3%) Strand=Plus/Plus Query 11464 ATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGATCCAC 11523 ||| || |||||||| || || || |||| ||| | ||||||| || || ||| | || Sbjct 30667 ATCAGCAACGAATTCGATGTATTGGCACATCAAAGCAGAATTCATGCCGATGAGAGCAAC 30726 Query 11524 CGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATCGACGT 11583 |||| |||| | |||||||| |||| ||| || | || || || | ||| || | | Sbjct 30727 GGGAAGAGCATCCGTCAAAAATTCCTGTTCAATGCTGACAGCTTCCAAGATGATATCCTT 30786 Query 11584 TATAACTTCCTTAGAT-GGTGGATGTAATAA-ATGTTTAAACATTAAACACGCAAAATCA 11641 | ||| || | | || | | || || ||| |||| | | ||| ||||| ||| Sbjct 30787 GACGCGTTC-TTGGCTAGGACGCT-TACGAAGATGGGTAAATAAAAGACAAGCAAAGTCA 30844 Query 11642 CAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAAT 11701 ||| | ||||| || | || || | |||||| ||||| || || |||||||| Sbjct 30845 GTATGAAGGCCTTCATCACGACAGATCAATTCATTGCTGAATGTCAAACCAGGCATCAAA 30904 Query 11702 CCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACA 11761 || ||||| || | |||||| || | |||||| |||||||| ||||| || || || ||| Sbjct 30905 CCACGTTTCTTGAGCCAAAAAATGGAAGCAAAGGAACCAGAGAAGAAAATACCTTCGACA 30964 Query 11762 GCTGCAAATGCTACTACTCTTTCTCCATAT--ACCTTGTTGCTAGATATCCATTTTCTGG 11819 || ||||| || || | | || || | ||| ||| || ||||| || || Sbjct 30965 GCAGCAAAGGCAACAAGACGCTCAGCAAAAGAACC--GTTAGAGGAAATCCACTTGAAGG 31022 Query 11820 CCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAATGCATTT 11879 |||||||||| || |||| | || || || || ||||| ||| | |||||| Sbjct 31023 CCCAATCAGCCTTTCTTTTGATACAAGGGATAGTGTCAATAGCAGAAAAGA---GCATTT 31079 Query 11880 -TTTCTATA--TTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAA 11936 ||||| | |||||| | | ||| || || || || | ||| || |||||| |||| Sbjct 31080 CTTTCTCTTGGTTATCTTTGATATAAGTGTCAATCAAAAGACTGTAAGTTTCTGCGTGAA 31139 Query 11937 TATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCA 11996 ||||||| || |||||||| |||||||||||| || || | | || || || Sbjct 31140 TATTTTCAATCATGATTTGAAAGCCATAGAAACATTTAGCTTCAGGAATCTTGACTTCAT 31199 Query 11997 CATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTA 12056 || |||| ||| | || || ||||| ||||| ||||| | ||||| || |||| Sbjct 31200 CACAAAAGTTTTGAACCAAGTTTTCATTAACAATGCCATCTGAACCAGCAAAGAAGGCTA 31259 Query 12057 GTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAAT----TTATCCCAATCATCTAAA 12112 | | |||||| | ||||| ||| | | || || |||||||||| | Sbjct 31260 AGACGCGAGAGATAAAGAAGCGTTCGT-TTTCGGTCATCTTGTTTTCCCAATCATGAAGG 31318 Query 12113 TCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATT 12172 || || ||||| | ||||||| | |||||||| || | | || ||||| | | Sbjct 31319 TCCTTGCTCAAATCGATTTCTTCAGCTGTCCAAAAGGAAGCTTCAGCTTTCTTATAGAAT 31378 Query 12173 TTCCAGAT 12180 | |||||| Sbjct 31379 TGCCAGAT 31386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468519862919920