Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosporium_20cladosporioides_20[genbank_20GCA_5F001931875.2_202017 -02-15] 843 sequences; 47,573,060 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq657 113 4e-20 seq812 102 8e-17 seq609 102 8e-17 >seq657 Length=446211 Score = 113 bits (124), Expect = 4e-20 Identities = 160/225 (71%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 52837 GAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGC 52896 || |||||||||||||| | ||||| | |||||||| | ||||| | | | || Sbjct 212010 GATGCCGTCGACATTGAGCAGGAGTTCCTGACGGACGCCCTCCCCGTTGCCCTCCTTGGT 211951 Query 52897 ATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATGCAG 52956 |||||| | | | |||||| ||||||||||||| ||||| ||| | ||| || | Sbjct 211950 ATGAACTCCAAGCTCATGTGCCAGTACATCGAGTTCGTTGCCGACCGCCTGCTGGTCTCT 211891 Query 52957 CTCGGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATATCG 53016 || || | ||| ||||| || || |||||||| || ||| ||||||| ||| Sbjct 211890 CTTGGCAACAAGAAGTACTACAACGCCACAAACCCCTTCGACTTCATGGACAACATCTCG 211831 Query 53017 CTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTAC 53061 |||| ||||| || ||||| ||||||| ||||| || || ||| Sbjct 211830 CTCGCTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTAC 211786 >seq812 Length=913560 Score = 102 bits (112), Expect = 8e-17 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 |||||||| || |||||||| |||||| || |||| ||||| | ||| |||||| Sbjct 528783 GTAGACTCCTTCTGAATGTTGTAATCGGACAAGGTGCGGCCATCTTCCAACTGCTTACCA 528842 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| ||||| ||||| |||||||| ||||||||||| || ||| || || Sbjct 528843 GCAAAGATAAGACGCTGCTGGTCGGGAGGGATGCCTTCTTTATCTTGGATCTTGCTCTTG 528902 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | || || | | || || || | || | ||||||||||||| || Sbjct 528903 ACGTTATCGATGGTATCTGACGATTCGACTTCCAGAGTAATAGTCTTGCCGGTCAGAGTC 528962 Query 139748 TTTACGAATATTTGCATAGCT 139768 || ||||| || |||||| || Sbjct 528963 TTGACGAAAATCTGCATACCT 528983 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || | ||||| || ||||| || || ||||| || ||| | ||||| Sbjct 528993 CGCAGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGTGTGCGGCCA 529052 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || || ||||| || ||||| |||||||||||||||| |||||||| || || || || Sbjct 529053 TCCTCAAGCTGCTTTCCAGCGAAGATCAGACGTTGCTGGTCGGGAGGGATACCCTCCTTA 529112 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | ||||||| | ||| ||||| | ||| | Sbjct 529113 TCCTGGATCTTGCTCTTGACGTTGTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATA 529172 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 ||||| || || | || || ||||| || |||||| || Sbjct 529173 GTCTTTCCAGTAAGGGTCTTCACGAAGATCTGCATACCT 529211 >seq609 Length=32548 Score = 102 bits (112), Expect = 8e-17 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| ||||||| ||||| || ||||||||||| ||||| ||| Sbjct 21019 CCACCACGAAGACGGAGAACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAATCACTC 20960 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||||||| |||||||| || | || |||||||| ||||| ||||| Sbjct 20959 AAGGTACGACCGTCTTCGAGTTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGAGGG 20900 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 || ||||| || || ||| ||||| || Sbjct 20899 ATACCTTCCTTATCTTGGATCTTTTGCTT 20871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496058772725600