Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosporium_20cladosporioides_20[genbank_20GCA_5F001931875.2_202017 -02-15] 843 sequences; 47,573,060 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq744 181 1e-40 >seq744 Length=38458 Score = 181 bits (200), Expect = 1e-40 Identities = 546/837 (65%), Gaps = 12/837 (1%) Strand=Plus/Plus Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 |||||| ||| || | |||||||||||||| || || |||| || || || | || Sbjct 30544 TTGATAGTCAGAGACACGCTTTTCAAAGAAGTTGGTCTTGCCTTGAAGAGAGATCATGTC 30603 Query 13643 CATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAA 13702 |||||| ||||||||||| | | ||| | | || ||| | || || | | | | Sbjct 30604 CATAAAGTCAAATGGATTGGTAGCCATGTAAATCTTGTCAAATCCAAGAGCAACCATGAG 30663 Query 13703 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13762 | |||||||| || || || ||||| |||| ||| || ||||||| || || || Sbjct 30664 ACGATCAGCAACGAATTCGATGTATTGGCACATCAAAGCAGAATTCATGCCGATGAGAGC 30723 Query 13763 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAAT 13822 || |||| || || |||||||| | ||| || ||||| || || ||| Sbjct 30724 AACGGGAAGAGCATCCGTCAAAAATTCCTGTTCAATGCTGACAGCTTCCAAGATGATATC 30783 Query 13823 TGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATC 13882 | | || | |||| | | ||||| |||| | | ||| ||||| || Sbjct 30784 CTTGACGCGTTCTTGGCTAGGACGCTTACGAAGATGGGTAAATAAAAGACAAGCAAAGTC 30843 Query 13883 ACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAA 13942 | ||||||||| ||||| | || || | ||| || ||||| || || |||||||| Sbjct 30844 AGTATGAAGGCCTTCATCACGACAGATCAATTCATTGCTGAATGTCAAACCAGGCATCAA 30903 Query 13943 TCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAAC 14002 || ||||| || | |||||| || | |||||| || || || ||||| || || || || Sbjct 30904 ACCACGTTTCTTGAGCCAAAAAATGGAAGCAAAGGAACCAGAGAAGAAAATACCTTCGAC 30963 Query 14003 TGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCT 14062 |||||||| || | | || || |||| || | || | || ||||| || Sbjct 30964 AGCAGCAAAGGCAACAAGACGCTCAGCAAAAGAACCGTTAGAG---GAAATCCACTTGAA 31020 Query 14063 AGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTC 14122 ||||| |||| ||| |||| ||| || || || ||||||||| ||| | ||| Sbjct 31021 GGCCCAATCAGCCTTTCTTTTGATACAAGGGATAGTGTCAATAGCAGAAAAGAGCATTTC 31080 Query 14123 CTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTAT 14182 ||||||| || | || || || ||||| | | || || |||| | ||| || Sbjct 31081 TTTCTCTTGGTTATCTTTGATATAAGTGTCAATCAAAAGACTGTAAGTTTCTGCGTGAAT 31140 Query 14183 GTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCG-ACCATTGTACTTCCG 14241 ||||| || || ||||| ||||| || ||| ||||||| | | ||| ||||| Sbjct 31141 ATTTTCAATCATGATTTGAAAGCCATAGAAACATTTAGCTTCAGGAATCTTG-ACTTCAT 31199 Query 14242 AGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCA 14301 |||| ||| |||| ||||||||||| || ||||| | | ||||| || || | Sbjct 31200 CACAAAAGTTTTGAACCAAGTTTTCATTAACAATGCCATCTGAACCAGCAAAGAAGGCTA 31259 Query 14302 ATATGTTTTTAATAAAGTA---TTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAAA- 14357 | | | |||||| | || | ||| | | |||| |||||| || || Sbjct 31260 AGACGCGAGAGATAAAGAAGCGTTCGTTTTCGGTCATCTTGTTTTCCCAATC--ATGAAG 31317 Query 14358 -TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATA 14413 ||||| | ||| | ||| ||| |||||||||| ||| ||||||| ||||| Sbjct 31318 GTCCTTGCTCAAATCGATTTCTTCAGCTGTCCAAAAGGAAGCTTCAGCTTTCTTATA 31374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479722944866200