Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosporium_20cladosporioides_20[genbank_20GCA_5F001931875.2_202017 -02-15] 843 sequences; 47,573,060 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq744 239 6e-58 seq657 116 5e-21 seq723 102 1e-16 seq578 89.7 7e-13 >seq744 Length=38458 Score = 239 bits (264), Expect = 6e-58 Identities = 565/847 (67%), Gaps = 11/847 (1%) Strand=Plus/Plus Query 41776 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTC 41835 ||| || ||| ||||| ||||| || || || ||||| |||| | || || | || Sbjct 30544 TTGATAGTCAGAGACACGCTTTTCAAAGAAGTTGGTCTTGCCTTGAAGAGAGATCATGTC 30603 Query 41836 CATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA 41895 ||| || ||||| ||||||||| | | ||||| || | |||||| | || || | Sbjct 30604 CATAAAGTCAAATGGATTGGTAGCCATGTAAATCTTGTCAAATCCAAGAGCAACCATGAG 30663 Query 41896 TCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 41955 | ||| || | |||||| || ||| ||||| || ||||||| || || || Sbjct 30664 ACGATCAGCAACGAATTCGATGTATTGGCACATCAAAGCAGAATTCATGCCGATGAGAGC 30723 Query 41956 AACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGA 42015 ||| |||||||| | || | |||||| |||||||| ||| || || || ||| Sbjct 30724 AACGGGAAGAGCATCCGTCAAAAATTCCTGTTCAATGCTGACAGCTTCCAAGATGATATC 30783 Query 42016 TCTTACTGTTTCTTCACTCGGTGGAT-ACAATAAATGTTTAAACATCAAACATGCGAAAT 42074 | || ||||| || || | | || | | ||| |||| | | ||| || || | Sbjct 30784 CTTGACGCGTTCTTGGCTAGGACGCTTACGA-AGATGGGTAAATAAAAGACAAGCAAAGT 30842 Query 42075 CGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTA 42134 | || || || ||||| | || || ||||| ||| || || | || ||||| | Sbjct 30843 CAGTATGAAGGCCTTCATCACGACAGATCAATTCATTGCTGAATGTCAAACCAGGCATCA 30902 Query 42135 GGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTA 42194 ||||| || || |||||||| || || ||||| || ||||| ||||| || ||||| | Sbjct 30903 AACCACGTTTCTTGAGCCAAAAAATGGAAGCAAAGGAACCAGAGAAGAAAATACCTTCGA 30962 Query 42195 CTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGT---ATCCACTTTT 42251 | || |||||||||| ||| | ||| || || | || || | |||||||| Sbjct 30963 CAGCAGCAAAGGCAACAAGACGCTCAGCAAAA---GAACCGTTAGAGGAAATCCACTTGA 31019 Query 42252 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGt 42311 |||||||| ||||| |||| | |||||| || || || || ||| |||||| | Sbjct 31020 AGGCCCAATCAGCCTTTCTTTTGATACAAGGGATAGTGTCAATAGCAGAAAAGAGCATTT 31079 Query 42312 ttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAA 42371 ||| || | ||||||| | ||| || || ||||||||||| || |||||| |||| Sbjct 31080 CTTTCTCTTGGTTATCTTTGATATAAGTGTCAATCAAAAGACTGTAAGTTTCTGCGTGAA 31139 Query 42372 TGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTG 42431 | |||||||| || ||||| || ||||||||| | || || | || || ||||| Sbjct 31140 TATTTTCAATCATGATTTGAAAGCCATAGAAACATTTAGCTTCAGGAATCTTGACTTCAT 31199 Query 42432 TACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 42491 |||||| || | | || ||||| || || || || || | ||||| || || | Sbjct 31200 CACAAAAGTTTTGAACCAAGTTTTCATTAACAATGCCATCTGAACCAGCAAAGAAGGCTA 31259 Query 42492 ATACATGTTTTATAAAATATTTTTCG--TCCGGTGTTAAT-TTATTCCAATCATTGATAT 42548 | || | ||||| | |||| | |||| | | || | |||||||| | | Sbjct 31260 AGACGCGAGAGATAAAGAAGCGTTCGTTTTCGGTCATCTTGTTTTCCCAATCATGAAGGT 31319 Query 42549 CTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATAT 42608 | || | ||| | |||||| | |||||||| || ||||| || || ||||| | | Sbjct 31320 CCTTGCTCAAATCGATTTCTTCAGCTGTCCAAAAGGAAGCTTCAGCTTTCTTATAGAATT 31379 Query 42609 TCCAGAT 42615 |||||| Sbjct 31380 GCCAGAT 31386 >seq657 Length=446211 Score = 116 bits (128), Expect = 5e-21 Identities = 118/154 (77%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 42056 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAA 42115 |||| || ||| ||||| ||| ||||||||||||||| | | || | ||||| || Sbjct 212063 AACAGCAGACAAGCGAAGTCGGTGTGCAGACCCTCATCACGAGAGATCAGCTCGTTAGAG 212122 Query 42116 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCA 42175 || || || || ||||| ||||||||||| || ||||| || ||||| || || || ||| Sbjct 212123 AAGGTCAGACCAGGCATGAGGCCACGCTTCTTCAGCCAGAAGATAGAGGCGAAAGAGCCA 212182 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAA 42209 || |||||||| || || || || || ||||||| Sbjct 212183 GAGAAGAAGATACCCTCAACAGCAGCGAAGGCAA 212216 >seq723 Length=18298 Score = 102 bits (112), Expect = 1e-16 Identities = 276/421 (66%), Gaps = 5/421 (1%) Strand=Plus/Plus Query 70839 ATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTT 70898 |||||||||||| || |||| || |||| | ||||| |||||| || | ||| Sbjct 4430 ATAGTACATGCCAGTCTTTAATCCCTTCTTCCAGGCATAAAAGTGCATAGAGGTCAATTT 4489 Query 70899 GGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCC 70958 | | || | || ||||| | | |||||| || ||| ||| ||||| || ||||| Sbjct 4490 GCCAAAGTTTGGTTCGGCAGTAAACAAATTCATAGATTGAGATTGGTCGATAAAAGCTCC 4549 Query 70959 CCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC 71018 || || || ||||| | || || || |||||| ||| ||||| | ||||| || | Sbjct 4550 TCTATCAGCGGCCATGTCAATAATAGTTCTTTGTGAAATCTCCCATACTGTTTTGTATAG 4609 Query 71019 TCGCTTAATATCTTCTGGAAGGTTTGTATTCTGAATGGAT----CCACCATCTGCAATAA 71074 || | ||| || |||| | | | | | ||||| || |||| ||||| | Sbjct 4610 CTTTTTGAGATCATCAGGAACGCCGGGAATACG-TTGGATACTACCGCCATGAGCAATCA 4668 Query 71075 TCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAG 71134 || | || ||||| | ||||||||||| | ||| | | | | | | ||| Sbjct 4669 TCATGTTCTTGATGTTATCATTCCATAAATCGAGCTCAATGAGGTCATTCAATAAATGCT 4728 Query 71135 GATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACG 71194 | || |||| ||| ||||| ||| || | ||| || |||||||| || || || | Sbjct 4729 GGTTGACTATTTGGAATTCACCACTTTGAACACGACGCGTATAAATATTGCTAGTGTAAG 4788 Query 71195 GTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 71254 | || | | || ||||| ||||| |||||| ||| ||||| |||||||| || | Sbjct 4789 GCTCGAAGCATTCGTTATTGCCCAATATTTGACTAGTGCTAGCAGTAGGCATAGGAGCAA 4848 Query 71255 C 71255 | Sbjct 4849 C 4849 >seq578 Length=440600 Score = 89.7 bits (98), Expect = 7e-13 Identities = 197/292 (67%), Gaps = 5/292 (2%) Strand=Plus/Minus Query 70788 TTCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACAT 70847 ||||| ||| | || |||||||| |||| || || || | || || || |||||||| Sbjct 117221 TTCCTGGTCGACGGTGAACTGAATAGGAGCAGAAGCAGCCATAGTGCGAAGGTAGTACAT 117162 Query 70848 GCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTG-GAATAGC 70906 ||| || || ||||| | ||||||| || |||||||| || | ||| |||| Sbjct 117161 GCCGGTCTTCAGACCCATCTTCCATCCAGCGAAGTGCATACTGGTGATCTTGCCCATAG- 117103 Query 70907 TAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTG 70966 |||| || ||||| || || | |||||| || || ||| | || || | ||||| Sbjct 117102 TAGGCTCCCTCATGTGGATGTTAAGGGACTGAGACTGGTCAATGTACGCGCCACGGTCTG 117043 Query 70967 CAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAA 71026 ||||||| | | ||| || || | |||||||| | ||| || || | ||| | Sbjct 117042 CAGCCATCTGAAGGATGGTACGCTGAGAGATTTCCCACACAGTCTTGTACAGAGCCTTGA 116983 Query 71027 TATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCAATAAT 71075 | || | |||| ||| | | ||||| | ||| || || || ||||| || Sbjct 116982 TGTCGGCAGGAATGTTGGGGATGTTCTGGACGGAACCTCCCTCGGCAATGAT 116931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671132127870680