Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosporium_20cladosporioides_20[genbank_20GCA_5F001931875.2_202017 -02-15] 843 sequences; 47,573,060 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq812 102 8e-17 seq609 102 8e-17 seq657 89.7 5e-13 seq723 82.4 8e-11 >seq812 Length=913560 Score = 102 bits (112), Expect = 8e-17 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 ||||| || || || |||||||||||| || |||| ||||| | || |||||| Sbjct 528783 GTAGACTCCTTCTGAATGTTGTAATCGGACAAGGTGCGGCCATCTTCCAACTGCTTACCA 528842 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||| ||||| ||||| |||||||| ||||||||||| || || || || Sbjct 528843 GCAAAGATAAGACGCTGCTGGTCGGGAGGGATGCCTTCTTTATCTTGGATCTTGCTCTTG 528902 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | || || | | ||| ||||| | ||| | ||||||||||||| || Sbjct 528903 ACGTTATCGATGGTATCTGACGATTCGACTTCCAGAGTAATAGTCTTGCCGGTCAGAGTC 528962 Query 143168 TTTACGAATATTTGCATAGCT 143188 || ||||| || |||||| || Sbjct 528963 TTGACGAAAATCTGCATACCT 528983 >seq609 Length=32548 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||| || |||| |||||||| ||||| ||||||||||| ||| Sbjct 21019 CCACCACGAAGACGGAGAACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAATCACTC 20960 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | |||||||||||||||||| || | || |||||||| ||||| ||||| Sbjct 20959 AAGGTACGACCGTCTTCGAGTTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGAGGG 20900 Query 143078 ATGCCTTCTTTGTC 143091 || ||||| || || Sbjct 20899 ATACCTTCCTTATC 20886 >seq657 Length=446211 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 50632 GAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCATTGTTGGGC 50691 || ||||||||||| || | ||||| | |||||||| | ||||| || | | || Sbjct 212010 GATGCCGTCGACATTGAGCAGGAGTTCCTGACGGACGCCCTCCCCGTTGCCCTCCTTGGT 211951 Query 50692 ATGAACGCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAGACAGATTGTTGTTGCAG 50751 |||||| | | | |||||| ||||||| ||||| ||||| ||| | || || | Sbjct 211950 ATGAACTCCAAGCTCATGTGCCAGTACATCGAGTTCGTTGCCGACCGCCTGCTGGTCTCT 211891 Query 50752 CTGGGACAAC-CGAAATACTATAATGCACGTAACCCCTTTCCGTTTATGAATAACATATC 50810 || || |||| ||| ||||| || || |||||||| || ||| | ||||| || Sbjct 211890 CTTGG-CAACAAGAAGTACTACAACGCCACAAACCCCTTCGACTTCATGGACAACATCTC 211832 Query 50811 GTTGGAGGGCAAAACAAACTTTTTCGAAAGACGTGTAGGCGAATAC 50856 | | | ||||| || ||||| ||||| | ||||| || || ||| Sbjct 211831 GCTCGCTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTAC 211786 >seq723 Length=18298 Score = 82.4 bits (90), Expect = 8e-11 Identities = 147/212 (69%), Gaps = 11/212 (5%) Strand=Plus/Plus Query 156182 AAATAGTACATGCCGGTTTTGAGGCCGCGCTTCCAACCGTACATGTGCACCGACGCCATT 156241 |||||||||||||| || || | || |||||| | || | ||||| || | || | Sbjct 4428 AAATAGTACATGCCAGTCTTTAATCCCTTCTTCCAGGCATAAAAGTGCATAGAGGTCAAT 4487 Query 156242 TTAGGCAAAGTAGGGTTTGCCA-TGTACACGTTGAACGATTGACTTTGATCGATAAATGC 156300 || | |||||| |||| | || | ||| || | |||||| ||| |||||||| || Sbjct 4488 TT-GCCAAAGTTTGGTTCGGCAGTAAACAAATTCATAGATTGAGATTGGTCGATAAAAGC 4546 Query 156301 TCCCCTGTCTGCTGCCATTTCAATCATATATTTTCCATTGTTCTCCCAAATTTCCCAGAT 156360 ||| || || || ||||| ||||| ||| | | |||| |||| ||||| | Sbjct 4547 TCCTCTATCAGCGGCCATGTCAATAATA----GTTCTTTGT-----GAAATCTCCCATAC 4597 Query 156361 TGTCATGTACAGCTTTTTTAGATTGTCGGGAA 156392 ||| |||| |||||||| |||| || |||| Sbjct 4598 TGTTTTGTATAGCTTTTTGAGATCATCAGGAA 4629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507009057335760