Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cladosporium_20cladosporioides_20[genbank_20GCA_5F001931875.2_202017
-02-15] 843 sequences; 47,573,060 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq812 102 8e-17
seq609 102 8e-17
seq657 89.7 5e-13
seq723 82.4 8e-11
>seq812
Length=913560
Score = 102 bits (112), Expect = 8e-17
Identities = 143/201 (71%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047
||||| || || || |||||||||||| || |||| ||||| | || ||||||
Sbjct 528783 GTAGACTCCTTCTGAATGTTGTAATCGGACAAGGTGCGGCCATCTTCCAACTGCTTACCA 528842
Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107
||| |||| ||||| ||||| |||||||| ||||||||||| || || || ||
Sbjct 528843 GCAAAGATAAGACGCTGCTGGTCGGGAGGGATGCCTTCTTTATCTTGGATCTTGCTCTTG 528902
Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167
| | || | || || | | ||| ||||| | ||| | ||||||||||||| ||
Sbjct 528903 ACGTTATCGATGGTATCTGACGATTCGACTTCCAGAGTAATAGTCTTGCCGGTCAGAGTC 528962
Query 143168 TTTACGAATATTTGCATAGCT 143188
|| ||||| || |||||| ||
Sbjct 528963 TTGACGAAAATCTGCATACCT 528983
>seq609
Length=32548
Score = 102 bits (112), Expect = 8e-17
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| || || | ||| | ||| || |||| |||||||| ||||| ||||||||||| |||
Sbjct 21019 CCACCACGAAGACGGAGAACCAAGTGAAGGGTAGATTCCTTTTGAATGTTGTAATCACTC 20960
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| || | |||||||||||||||||| || | || |||||||| ||||| |||||
Sbjct 20959 AAGGTACGACCGTCTTCGAGTTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGAGGG 20900
Query 143078 ATGCCTTCTTTGTC 143091
|| ||||| || ||
Sbjct 20899 ATACCTTCCTTATC 20886
>seq657
Length=446211
Score = 89.7 bits (98), Expect = 5e-13
Identities = 157/226 (69%), Gaps = 2/226 (1%)
Strand=Plus/Minus
Query 50632 GAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCATTGTTGGGC 50691
|| ||||||||||| || | ||||| | |||||||| | ||||| || | | ||
Sbjct 212010 GATGCCGTCGACATTGAGCAGGAGTTCCTGACGGACGCCCTCCCCGTTGCCCTCCTTGGT 211951
Query 50692 ATGAACGCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAGACAGATTGTTGTTGCAG 50751
|||||| | | | |||||| ||||||| ||||| ||||| ||| | || || |
Sbjct 211950 ATGAACTCCAAGCTCATGTGCCAGTACATCGAGTTCGTTGCCGACCGCCTGCTGGTCTCT 211891
Query 50752 CTGGGACAAC-CGAAATACTATAATGCACGTAACCCCTTTCCGTTTATGAATAACATATC 50810
|| || |||| ||| ||||| || || |||||||| || ||| | ||||| ||
Sbjct 211890 CTTGG-CAACAAGAAGTACTACAACGCCACAAACCCCTTCGACTTCATGGACAACATCTC 211832
Query 50811 GTTGGAGGGCAAAACAAACTTTTTCGAAAGACGTGTAGGCGAATAC 50856
| | | ||||| || ||||| ||||| | ||||| || || |||
Sbjct 211831 GCTCGCTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTAC 211786
>seq723
Length=18298
Score = 82.4 bits (90), Expect = 8e-11
Identities = 147/212 (69%), Gaps = 11/212 (5%)
Strand=Plus/Plus
Query 156182 AAATAGTACATGCCGGTTTTGAGGCCGCGCTTCCAACCGTACATGTGCACCGACGCCATT 156241
|||||||||||||| || || | || |||||| | || | ||||| || | || |
Sbjct 4428 AAATAGTACATGCCAGTCTTTAATCCCTTCTTCCAGGCATAAAAGTGCATAGAGGTCAAT 4487
Query 156242 TTAGGCAAAGTAGGGTTTGCCA-TGTACACGTTGAACGATTGACTTTGATCGATAAATGC 156300
|| | |||||| |||| | || | ||| || | |||||| ||| |||||||| ||
Sbjct 4488 TT-GCCAAAGTTTGGTTCGGCAGTAAACAAATTCATAGATTGAGATTGGTCGATAAAAGC 4546
Query 156301 TCCCCTGTCTGCTGCCATTTCAATCATATATTTTCCATTGTTCTCCCAAATTTCCCAGAT 156360
||| || || || ||||| ||||| ||| | | |||| |||| ||||| |
Sbjct 4547 TCCTCTATCAGCGGCCATGTCAATAATA----GTTCTTTGT-----GAAATCTCCCATAC 4597
Query 156361 TGTCATGTACAGCTTTTTTAGATTGTCGGGAA 156392
||| |||| |||||||| |||| || ||||
Sbjct 4598 TGTTTTGTATAGCTTTTTGAGATCATCAGGAA 4629
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 507009057335760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |