Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosporium_20cladosporioides_20[genbank_20GCA_5F001931875.2_202017 -02-15] 843 sequences; 47,573,060 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq744 127 2e-24 >seq744 Length=38458 Score = 127 bits (140), Expect = 2e-24 Identities = 462/715 (65%), Gaps = 16/715 (2%) Strand=Plus/Plus Query 12986 TCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTTACA 13045 |||||||| || || ||||| || ||| ||| || | ||||| || || | || Sbjct 30668 TCAGCAACGAATTCGATGTATTGGCACATCAAAGCAGAATTCATGCCGATGAGAGCAACG 30727 Query 13046 GGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTCTCTT 13105 || | ||| || || ||||| | | ||| || || ||||| | | || || ||| Sbjct 30728 GGAAGAGCATCCGTCAAAAATTCCTGTTCAATGCTGACAGCTTCCAAGATGATATC-CTT 30786 Query 13106 ATTACGTTCT---CTAATGGAGGATTTGATAGATGCTTAAACATCATACATGCAAAATCA 13162 |||||| ||| ||| | || ||||| |||| | | ||| ||||| ||| Sbjct 30787 GACGCGTTCTTGGCTA--GGACGCTTACGAAGATGGGTAAATAAAAGACAAGCAAAGTCA 30844 Query 13163 CAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGC 13222 || | |||||||| | || || | || || ||||| | ||| ||||| | Sbjct 30845 GTATGAAGGCCTTCATCACGACAGATCAATTCATTGCTGAATGTCAAACCAGGCATCAAA 30904 Query 13223 CCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACT 13282 || ||||| || | |||||| || | |||||| ||||| || || || || ||||| || Sbjct 30905 CCACGTTTCTTGAGCCAAAAAATGGAAGCAAAGGAACCAGAGAAGAAAATACCTTCGACA 30964 Query 13283 GCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCACTTTCTG 13342 || ||||| || | | | ||| || | | || || | |||||||| | Sbjct 30965 GCAGCAAAGGCAACAAGACGCTCAGCAAAAGAACCGTT---AGAGGAAATCCACTTGAAG 31021 Query 13343 GCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAATAAttt 13402 ||||| | || ||| ||| | || ||| | || || || ||| | |||| Sbjct 31022 GCCCAATCAGCCTTTCTTTTGATACAAGGGATAGTGTCAATAGCAGAAAAGAGC--ATTT 31079 Query 13403 ttttC-CTTACTG-TCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAA 13460 |||| ||| | ||| |||||||| || ||||| | || || |||||| |||| Sbjct 31080 CTTTCTCTTGGTTATCTTTGATATAAGTGTCAATCAAAAGACTGTAAGTTTCTGCGTGAA 31139 Query 13461 TATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGG 13520 ||||||| ||| ||||| || ||||| |||||| |||| || | | || ||||| Sbjct 31140 TATTTTCAATCATGATTTGAAAGCCATAGAAACATTTAGCTTCAGGAATCTTGACTTCAT 31199 Query 13521 AGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAA 13580 |||| ||| | |||||||| ||||| || || || | ||||||| || || | Sbjct 31200 CACAAAAGTTTTGAACCAAGTTTTCATTAACAATGCCATCTGAACCAGCAAAGAAGGCTA 31259 Query 13581 GTATGTGCTTAATAAAttttttttCGTTTTCTGACAAC---TTTAACCAATCTGGAAAAT 13637 | | | ||||| ||||||||| | || | ||| |||||| ||| | Sbjct 31260 AGACGCGAGAGATAAAGAAGCGTTCGTTTTCGGTCATCTTGTTTTCCCAATCATGAAGGT 31319 Query 13638 CTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATA 13692 | || ||||| | || ||| | |||||||| ||||| |||| |||||||| Sbjct 31320 CCTTGCTCAAATCGATTTCTTCAGCTGTCCAAAAGGAAGCTTCAGCTTTCTTATA 31374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430977972059886