Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosporium_20cladosporioides_20[genbank_20GCA_5F001931875.2_202017 -02-15] 843 sequences; 47,573,060 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq744 183 7e-41 seq812 111 4e-19 seq657 104 5e-17 seq609 98.7 2e-15 >seq744 Length=38458 Score = 183 bits (202), Expect = 7e-41 Identities = 311/445 (70%), Gaps = 7/445 (2%) Strand=Plus/Minus Query 268855 TCTT-GCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCT 268913 |||| || || ||||| | | ||||| || ||||| ||||| | || | || || | Sbjct 31262 TCTTAGCCTTCTTTGCTGGTTCAGATGGCATTGTTAATGAAAACTTGGTTCAAAACTTTT 31203 Query 268914 GTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAA 268973 || | || || ||||||||||||| | |||||| || || || || || || |||| Sbjct 31202 GTGATGAAGTCAAGATTCCTGAAGCTAAATGTTTCTATGGCTTTCAAATCATGATTGAAA 31143 Query 268974 ATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGA-A 269032 ||||||| |||| | |||||||| || || || |||||||| | |||||| | || | Sbjct 31142 ATATTCACGCAGAAACTTACAGTCTTTTGATTGACACTTATATCAAAGATAACCAAGAGA 31083 Query 269033 AAGAAAAGACTATTTTCTTCTATGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGG 269092 |||||| | || |||||| |||| ||||| ||| | | || ||| |||| ||| Sbjct 31082 AAGAAATG-CTCTTTTCTGCTATTGACACTATCCCTTGTATCAAAAGAAAGGCTGATTGG 31024 Query 269093 GCTCTGAAATGGATAAACGATAGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCT 269152 || | || ||||| | || || ||| | || | | ||||| ||||| ||| Sbjct 31023 GCCTTCAAGTGGATTTCCTCTAACGGTTCTTTTGCTGAGCGTCTTGTTGCCTTTGCTGCT 30964 Query 269153 GTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGC 269212 || |||||||| ||||| || || || ||||| | || |||||| | |||||| | || Sbjct 30963 GTCGAAGGTATTTTCTTCTCTGGTTCCTTTGCTTCCATTTTTTGGCTCAAGAAACGTGGT 30904 Query 269213 CTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGG--TTTACACT 269270 | ||||| || || || ||| || |||||||| | | || ||||| || | ||| Sbjct 30903 TTGATGCCTGGTTTGACATTCAGCAATGAATTGATCTGTCGTGATGAAGGCCTTCATACT 30844 Query 269271 GCGACTTCGCTTGTTTATTATTTAC 269295 ||||| |||||| | |||||||| Sbjct 30843 --GACTTTGCTTGTCTTTTATTTAC 30821 >seq812 Length=913560 Score = 111 bits (122), Expect = 4e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || |||||||| || || || || | || | || ||||| | || || ||| Sbjct 528783 GTAGACTCCTTCTGAATGTTGTAATCGGACAAGGTGCGGCCATCTTCCAACTGCTTACCA 528842 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT-TT 104481 ||||| || || | ||| || || ||||| || ||||||||||| || ||| ||||| || Sbjct 528843 GCAAAGATAAGACGCTGCTGGTCGGGAGGGATGCCTTCTTTATCTTGGATC-TTGCTCTT 528901 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | |||||| | ||| || || || ||||||||||| || || || || Sbjct 528902 GACGTTATCGATGGTATCTGACGATTCGACTTCCAGAGTAATAGTCTTGCCGGTCAGAGT 528961 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 528962 CTTGACGAAAATCTGCAT 528979 >seq657 Length=446211 Score = 104 bits (114), Expect = 5e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 269135 TTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTT 269194 || ||||| || || ||||| || ||||| ||||| || || ||||| ||| ||||||| Sbjct 212220 TTGGTTGCCTTCGCTGCTGTTGAGGGTATCTTCTTCTCTGGCTCTTTCGCCTCTATCTTC 212161 Query 269195 TGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGG 269254 ||| ||||||| | ||||| ||||| || | || ||||||||||| |||| | Sbjct 212160 TGGCTGAAGAAGCGTGGCCTCATGCCTGGTCTGACCTTCTCTAACGAGCTGATCTCTCGT 212101 Query 269255 GACGAAGGTTTACACTGCGACTTCGCTTGT 269284 || || ||| | ||| ||||||||||||| Sbjct 212100 GATGAGGGTCTGCACACCGACTTCGCTTGT 212071 >seq609 Length=32548 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| || ||||| || || ||| | || | ||||||||| |||||||| || Sbjct 20989 GTAGATTCCTTTTGAATGTTGTAATCACTCAAGGTACGACCGTCTTCGAGTTGTTTACCG 20930 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| || | |||||||||||||| || ||||| ||||| || |||||| || Sbjct 20929 GCGAAAATGAGACGTTGTTGATCAGGAGGGATACCTTCCTTATCTTGGATCTTTTGCTTG 20870 Query 104483 ACATTTTCTACGGTATC 104499 ||||| || | ||| || Sbjct 20869 ACATTGTCAATGGTGTC 20853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151385963817844