Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosporium_20cladosporioides_20[genbank_20GCA_5F001931875.2_202017 -02-15] 843 sequences; 47,573,060 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq709 210 3e-50 seq728 205 1e-48 seq342 194 3e-45 seq818 107 3e-19 >seq709 Length=14875 Score = 210 bits (232), Expect = 3e-50 Identities = 197/248 (79%), Gaps = 2/248 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| |||| ||||| || |||||||| || ||||||||||| |||| Sbjct 1573 CGCCAAGCGTCACCGCAAGATC-CTTCGTGACAACATCCAGGGTATCACCAAGCCCGCTA 1515 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||||||| ||||| |||||||| ||||||||| |||||| || |||| || |||| Sbjct 1514 TCCGTCGTCTCGCTCGCCGTGGTGGTGTCAAGCGTATCTCTGCCATGATCTACGAGGAGA 1455 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||||| |||| |||||| |||||| || || |||| ||| ||| || ||| || | Sbjct 1454 CTCGTGGTGTTCTGAAGACCTTCCTTGAGGGTGTCATCCGTGACGCTGTCACCTACACTG 1395 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| ||||| ||| | ||| ||||||| || |||| | |||| Sbjct 1394 AGCACGCCAAGCGCAAGACCGTCACTTCCCTCGATGTCGTCTACGCCCTGAAGAGGCAAG 1335 Query 16671 GCCGTAAG 16678 | |||||| Sbjct 1334 GACGTAAG 1327 >seq728 Length=11653 Score = 205 bits (226), Expect = 1e-48 Identities = 217/282 (77%), Gaps = 3/282 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||||||||| | ||| |||||| |||||||| ||||| || |||||||| ||||| Sbjct 1580 GCCAAGCGTCATCGTAAGAT-TCTTCGTGATAACATTCAAGGTATTACCAAGCCTGCTAT 1522 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| || ||||||||||| ||||||||| ||||||| | |||||||||| | Sbjct 1521 TCGTCGTCTTGCCCGTCGTGGTGGTGTCAAGCGTATCTCTGGTCTCATCTATGAAGAAAC 1462 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| | || |||||| ||||||| | | |||||| | ||||||| | || || || Sbjct 1461 TCGTAACGTCTTGAAGTCCTTCCTCGAAAACGTTATTCGTGATGCTGTTACTTACACTGA 1402 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || || | |||||||| ||||| ||||| | |||||||| | || | ||||| Sbjct 1401 ACATGCCAAGAGAAAGACTGTTACCTCTTTGGATGTTGTCTATGCTCTCAAGAGACAAGG 1342 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATC-TTCTAATCAAA 16712 ||||| | |||||||| || ||||| | |||| ||| || Sbjct 1341 CCGTACCCTCTATGGTTTCGGTGGTTAAGCATTCTCATCTAA 1300 >seq342 Length=11049 Score = 194 bits (214), Expect = 3e-45 Identities = 201/261 (77%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCG-CAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||||| |||| |||||| |||||||| ||||| || |||||||| ||||| Sbjct 5954 GCTAAGCGTCATCGTAAGAT-TCTTCGTGATAACATTCAAGGTATTACCAAGCCTGCTAT 6012 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| || ||||||||||| ||||||||| ||||||| | |||||||||| | Sbjct 6013 TCGTCGTCTTGCCCGTCGTGGTGGTGTCAAGCGTATCTCTGGTCTCATCTATGAAGAAAC 6072 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| | || ||||||| ||||| | | ||||| | ||||||| | ||||| || Sbjct 6073 TCGTAACGTCTTGAAGACTTTCCTTGAAAATGTTATTCGTGATGCTGTTACTTATACTGA 6132 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || || | |||||||| || ||| ||||| |||||||||| | || | ||||| Sbjct 6133 ACATGCCAAGAGAAAGACTGTTACTTCCTTGGATGTCGTCTATGCTCTCAAGAGACAAGG 6192 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 |||| | || ||||| || Sbjct 6193 TCGTACTCTCTACGGTTTCGG 6213 >seq818 Length=555245 Score = 107 bits (118), Expect = 3e-19 Identities = 86/101 (85%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| ||||| | || || |||||||| || ||||||||||| ||||| Sbjct 30501 GCCAAGCGCCACCGCAAGATCT-TGCGTGACAACATCCAGGGTATCACCAAGCCCGCTAT 30559 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||||||||| ||||||||||| || ||||||||| |||||| Sbjct 30560 CCGTCGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATCTCTG 30600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074429239199