Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cladosporium_20cladosporioides_20[genbank_20GCA_5F001931875.2_202017
-02-15] 843 sequences; 47,573,060 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq709 210 3e-50
seq728 205 1e-48
seq342 194 3e-45
seq818 107 3e-19
>seq709
Length=14875
Score = 210 bits (232), Expect = 3e-50
Identities = 197/248 (79%), Gaps = 2/248 (1%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| |||||||| |||| |||| ||||| || |||||||| || ||||||||||| ||||
Sbjct 1573 CGCCAAGCGTCACCGCAAGATC-CTTCGTGACAACATCCAGGGTATCACCAAGCCCGCTA 1515
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
|||||||||| ||||| |||||||| ||||||||| |||||| || |||| || ||||
Sbjct 1514 TCCGTCGTCTCGCTCGCCGTGGTGGTGTCAAGCGTATCTCTGCCATGATCTACGAGGAGA 1455
Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610
||||| |||| |||||| |||||| || || |||| ||| ||| || ||| || |
Sbjct 1454 CTCGTGGTGTTCTGAAGACCTTCCTTGAGGGTGTCATCCGTGACGCTGTCACCTACACTG 1395
Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670
||||||| || || ||||| ||||| ||| | ||| ||||||| || |||| | ||||
Sbjct 1394 AGCACGCCAAGCGCAAGACCGTCACTTCCCTCGATGTCGTCTACGCCCTGAAGAGGCAAG 1335
Query 16671 GCCGTAAG 16678
| ||||||
Sbjct 1334 GACGTAAG 1327
>seq728
Length=11653
Score = 205 bits (226), Expect = 1e-48
Identities = 217/282 (77%), Gaps = 3/282 (1%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| ||||||||||| | ||| |||||| |||||||| ||||| || |||||||| |||||
Sbjct 1580 GCCAAGCGTCATCGTAAGAT-TCTTCGTGATAACATTCAAGGTATTACCAAGCCTGCTAT 1522
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|||||||| || ||||||||||| ||||||||| ||||||| | |||||||||| |
Sbjct 1521 TCGTCGTCTTGCCCGTCGTGGTGGTGTCAAGCGTATCTCTGGTCTCATCTATGAAGAAAC 1462
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|||| | || |||||| ||||||| | | |||||| | ||||||| | || || ||
Sbjct 1461 TCGTAACGTCTTGAAGTCCTTCCTCGAAAACGTTATTCGTGATGCTGTTACTTACACTGA 1402
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|| || || | |||||||| ||||| ||||| | |||||||| | || | |||||
Sbjct 1401 ACATGCCAAGAGAAAGACTGTTACCTCTTTGGATGTTGTCTATGCTCTCAAGAGACAAGG 1342
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATC-TTCTAATCAAA 16712
||||| | |||||||| || ||||| | |||| ||| ||
Sbjct 1341 CCGTACCCTCTATGGTTTCGGTGGTTAAGCATTCTCATCTAA 1300
>seq342
Length=11049
Score = 194 bits (214), Expect = 3e-45
Identities = 201/261 (77%), Gaps = 2/261 (1%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCG-CAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|||||||||||||| |||| |||||| |||||||| ||||| || |||||||| |||||
Sbjct 5954 GCTAAGCGTCATCGTAAGAT-TCTTCGTGATAACATTCAAGGTATTACCAAGCCTGCTAT 6012
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|||||||| || ||||||||||| ||||||||| ||||||| | |||||||||| |
Sbjct 6013 TCGTCGTCTTGCCCGTCGTGGTGGTGTCAAGCGTATCTCTGGTCTCATCTATGAAGAAAC 6072
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|||| | || ||||||| ||||| | | ||||| | ||||||| | ||||| ||
Sbjct 6073 TCGTAACGTCTTGAAGACTTTCCTTGAAAATGTTATTCGTGATGCTGTTACTTATACTGA 6132
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|| || || | |||||||| || ||| ||||| |||||||||| | || | |||||
Sbjct 6133 ACATGCCAAGAGAAAGACTGTTACTTCCTTGGATGTCGTCTATGCTCTCAAGAGACAAGG 6192
Query 16672 CCGTAAGATTTATGGTTTTGG 16692
|||| | || ||||| ||
Sbjct 6193 TCGTACTCTCTACGGTTTCGG 6213
>seq818
Length=555245
Score = 107 bits (118), Expect = 3e-19
Identities = 86/101 (85%), Gaps = 2/101 (2%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| ||||| || |||| ||||| | || || |||||||| || ||||||||||| |||||
Sbjct 30501 GCCAAGCGCCACCGCAAGATCT-TGCGTGACAACATCCAGGGTATCACCAAGCCCGCTAT 30559
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532
||||||||| ||||||||||| || ||||||||| ||||||
Sbjct 30560 CCGTCGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATCTCTG 30600
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79074429239199
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |