Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosporium_20cladosporioides_20[genbank_20GCA_5F001931875.2_202017 -02-15] 843 sequences; 47,573,060 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq609 113 4e-20 seq744 109 5e-19 seq657 96.9 3e-15 >seq609 Length=32548 Score = 113 bits (124), Expect = 4e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | ||||| |||||||| || || ||||| || ||||| |||||| Sbjct 20853 GACACCATTGACAATGTCAAGCAAAAGATCCAAGATAAGGAAGGTATCCCTCCTGATCAA 20912 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | ||||||| || ||| |||||||||||||| | | | | | | || || || ||| Sbjct 20913 CAACGTCTCATTTTCGCCGGTAAACAACTCGAAGACGGTCGTACCTTGAGTGATTACAAC 20972 Query 26949 ATTCAAAAAGAATCTAC 26965 |||||||| |||||||| Sbjct 20973 ATTCAAAAGGAATCTAC 20989 >seq744 Length=38458 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 119655 ACACGTTTTTCaaaaaaaTTAGTCTTGCCCTCAAGAGATATGTTATTCATAAACTCGAAA 119714 ||||| |||||||| || || |||||||| | |||||| || | | |||||| || || Sbjct 30557 ACACGCTTTTCAAAGAAGTTGGTCTTGCCTTGAAGAGAGATCATGTCCATAAAGTCAAAT 30616 Query 119715 GGATTTGCAGTGTTGAAATGCTTGTCGTAGCCCAACTCGAACAACAGTCGATCTGCCACA 119774 ||||| | || || || |||||| | || | | | || || ||||| || || Sbjct 30617 GGATTGGTAGCCATGTAAATCTTGTCAAATCCAAGAGCAACCATGAGACGATCAGCAACG 30676 Query 119775 AACTCGATGTATTCGCACATGGATTGCGAATTCATGCCCAACATAGCGACCGGTAAAGCA 119834 || |||||||||| |||||| | ||||||||||| | | ||| || || | |||| Sbjct 30677 AATTCGATGTATTGGCACATCAAAGCAGAATTCATGCCGATGAGAGCAACGGGAAGAGCA 30736 Query 119835 TTGGTAAAGAAATCCTTTTCAATGTCGACCGCTTC 119869 | || || || |||| ||||||| ||| ||||| Sbjct 30737 TCCGTCAAAAATTCCTGTTCAATGCTGACAGCTTC 30771 >seq657 Length=446211 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 119642 CTTGTACTCGCCCACACGTTTTTCaaaaaaaTTAGTCTTGCCCTCAAGAGATATGTTATT 119701 || ||| || || ||||| || || || || || |||||||| | || || ||||| | Sbjct 211783 CTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCAGCGAGCGAGATGTTGTC 211842 Query 119702 CATAAACTCGAAAGGATTTGCAGTGTTGAAATGCTTGTCGTAGCCCAACTCGAACAACAG 119761 ||| || ||||| || |||| | |||| | | ||| | || ||| | || || ||| Sbjct 211843 CATGAAGTCGAAGGGGTTTGTGGCGTTGTAGTACTTCTTGTTGCCAAGAGAGACCAGCAG 211902 Query 119762 TCGATCTGCCACAAACTCGATGTATTCGCACATG-GATTGCGAATTCATGCCCAACATAG 119820 || || || || ||||||||||| | ||||||| | ||| || ||||| || | | | Sbjct 211903 GCGGTCGGCAACGAACTCGATGTACTGGCACATGAGCTTG-GAGTTCATACCAAGGAGGG 211961 Query 119821 CGACCGGTAAAGCATTGGTAAAGAAATCCTTTTCAATGTCGACCGCTTCTAC 119872 | || || | || | || | ||| |||| ||||||||||| || || || Sbjct 211962 CAACGGGGAGGGCGTCCGTCAGGAACTCCTGCTCAATGTCGACGGCATCAAC 212013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478657356094960